| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,954,430 – 14,954,525 |
| Length | 95 |
| Max. P | 0.641702 |
| Location | 14,954,430 – 14,954,525 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 80.61 |
| Mean single sequence MFE | -15.73 |
| Consensus MFE | -7.51 |
| Energy contribution | -7.63 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14954430 95 + 23771897 AAACAA---AUAGAAACUUGAAUGGAACUCUCUUAAUAUCUUUGAUCCACAACAAAACUUAAGAGAAUCAAAGAAAAAAGUCUUAUCGCUUUUUCUCU ......---...................((((((((....((((........))))..)))))))).....((((((((((......))))))).))) ( -11.80) >DroSec_CAF1 6177 92 + 1 AAACAA---AUAAGAACUUGAAUGGAACUCUCUUAAAAUCUUUGAUCCACAACAAAACUUAAGAGAAACCA---AAAAUGUCUUAUCGCUUUUUCUCU ......---((((((.......(((...((((((((....((((........))))..))))))))..)))---......))))))............ ( -13.62) >DroSim_CAF1 6490 92 + 1 AAACAA---AUAAGAACUUGAAUGGAACUCUCUUAAAAUCUUUGAUCCACAACAAAACUUAAGAGAAACAA---AAAAAGUCUUAUCGCUUUUUCUCU ......---((((((.(((...((....((((((((....((((........))))..))))))))..)).---...)))))))))............ ( -12.70) >DroEre_CAF1 6304 93 + 1 AAUCUG---AUAAGAACUCGAACUGUACUCUCUUUACAACCUUGAUCCGCAACAAGUCUUAAGAGAAGCAG--AAAUAAGUCUUAUCGCUUGUUCUCU .....(---((((((.......((((..((((((......((((........))))....)))))).))))--.......)))))))........... ( -19.44) >DroYak_CAF1 6612 96 + 1 AAUCGAAGAAUAAGAUCUUAAAUUAUGCUCUCUUUAAGUCCCUGAUCCCCAGCCAAACUUAAGAGAAGCGA--GAAUAAGUCUUAUCGCCUUUGCUCU ...(((((.((((((.((((..((.(((((((((.((((..(((.....)))....))))))))).)))).--)).))))))))))...))))).... ( -21.10) >consensus AAACAA___AUAAGAACUUGAAUGGAACUCUCUUAAAAUCUUUGAUCCACAACAAAACUUAAGAGAAACAA___AAAAAGUCUUAUCGCUUUUUCUCU .........((((((.............((((((((.....(((.....)))......))))))))..............))))))............ ( -7.51 = -7.63 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:15 2006