| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,576,840 – 1,576,995 |
| Length | 155 |
| Max. P | 0.980504 |
| Location | 1,576,840 – 1,576,958 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 85.89 |
| Mean single sequence MFE | -42.38 |
| Consensus MFE | -39.32 |
| Energy contribution | -39.32 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.980504 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1576840 118 + 23771897 UUCUGAAUCUCGCCGACCCACUCUCGAGUAUCGAUUUAGCCUUCGCUAUUUUCCCACUUGCUAUUUAAGUUGGCAACCGUUGACAGUUGUUAGCUGCAGCGGGAGACGCGGGGGCGGG ................(((....(((.....)))....((((((((...((((((..((((((.......))))))..((((.((((.....)))))))))))))).))))))))))) ( -42.70) >DroSec_CAF1 21052 102 + 1 ----------------CCCAUUCUCGAGUAUCGAUUUUGUCUUCGCUAUUUUGCCACUUGCUAUUUUAGUUGGAAACCGUUGACAGUUGGCAGCUGCAGCGGGAGUCGCGGAGGCGGG ----------------(((....(((.....)))....((((((((.((((..(((...((((...)))))))...((((((.((((.....)))))))))))))).))))))))))) ( -35.70) >DroSim_CAF1 21428 102 + 1 ----------------CCCACUCUCGAGUAUCGAUUUUGCCUUCGCUAUUUUGCCACUUGCUAUUUUAGUUGGCAACCGUUGACAGUUGGCAGCUGCAGCGGGCGUCGCGGGGGCGGG ----------------(((....(((.....)))....((((((((....((((((...((((...))))))))))((((((.((((.....)))))))))).....))))))))))) ( -42.20) >DroEre_CAF1 28191 115 + 1 UUCGGAAUCUCG-CGCCCCAC--UCGAGUAUCGAUUUUGCCUUCGCUAUUUUGCCACUUGGUAUUUUAGUUGGCAACCGUUGACAGUUGACAGCUGCAGCGGGAGUCGCGGGGGCGGG ........((((-(.((((((--((...........(((((...((((...((((....))))...)))).)))))((((((.((((.....)))))))))))))).).))).))))) ( -47.50) >DroYak_CAF1 22126 118 + 1 UUCUGAAUCUCGACGCCCCACUCUCGAGUAUCGAUUUUGCCUUCGCUAUUUUGCCACUUGGUAUUUUAGUUGGCAACCGUUGACAGUUGGCAGCUGCAGCGGGAGUCGCGGAGGCGGG ...(((..(((((..........)))))..)))...((((((((((.(((((((((.((((....)))).))))).((((((.((((.....)))))))))))))).)))))))))). ( -43.80) >consensus UUC_GAAUCUCG_CG_CCCACUCUCGAGUAUCGAUUUUGCCUUCGCUAUUUUGCCACUUGCUAUUUUAGUUGGCAACCGUUGACAGUUGGCAGCUGCAGCGGGAGUCGCGGGGGCGGG ................(((....(((.....)))....((((((((....((((((((.........)).))))))((((((.((((.....)))))))))).....))))))))))) (-39.32 = -39.32 + 0.00)
| Location | 1,576,880 – 1,576,995 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 83.34 |
| Mean single sequence MFE | -40.53 |
| Consensus MFE | -28.36 |
| Energy contribution | -29.98 |
| Covariance contribution | 1.63 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1576880 115 + 23771897 CUUCGCUAUUUUCCCACUUGCUAUUUAAGUUGGCAA--CCGUUGACAGUUGUUAGCUGCAGCGGGAGACGCGGGGGCGGGCCUUCAGCAUGUGGCCCUAGACAAUAGCAACAACCAU ....(((((((((((..((((((.......))))))--((((((.((((.....)))))))))).......))))).(((((..........))))).....))))))......... ( -41.40) >DroSec_CAF1 21076 115 + 1 CUUCGCUAUUUUGCCACUUGCUAUUUUAGUUGGAAA--CCGUUGACAGUUGGCAGCUGCAGCGGGAGUCGCGGAGGCGGGCCUUCAGCAUGUGGCCCUAGACAAUAGCAACAACCAU ....((((((..(((((.((((..........((..--((((((.((((.....))))))))))...))..(((((....))))))))).))))).......))))))......... ( -41.10) >DroSim_CAF1 21452 115 + 1 CUUCGCUAUUUUGCCACUUGCUAUUUUAGUUGGCAA--CCGUUGACAGUUGGCAGCUGCAGCGGGCGUCGCGGGGGCGGGCCUUCAGCAUGUGGCCCUAGACAAUAGCAACAACUAU ....((((((..(((((.((((......((.(((..--((((((.((((.....))))))))))..)))))(((((....))))))))).))))).......))))))......... ( -42.90) >DroEre_CAF1 28228 115 + 1 CUUCGCUAUUUUGCCACUUGGUAUUUUAGUUGGCAA--CCGUUGACAGUUGACAGCUGCAGCGGGAGUCGCGGGGGCGGGCCAUCAGCAUGUGGCCCUAGACAAUAGCAACAACCAU ....((((((((((((.((((....)))).))))))--((((((.((((.....))))))))))..(((((....))(((((((......)))))))..)))))))))......... ( -45.70) >DroYak_CAF1 22166 115 + 1 CUUCGCUAUUUUGCCACUUGGUAUUUUAGUUGGCAA--CCGUUGACAGUUGGCAGCUGCAGCGGGAGUCGCGGAGGCGGGCCAUCAGCAUGUGGCCCUAGACAAUAGCAACAACAAU ....((((((((((((.((((....)))).))))))--((((((.((((.....))))))))))..(((((....))(((((((......)))))))..)))))))))......... ( -45.70) >DroAna_CAF1 29683 97 + 1 -CCA--------GCCA---GGUUCCAGAGUUGCCAACACCGUUGAU---UGAC--GUGCAGCGGGC---GGGGAUCGGGGCUUUCAGCAUGUGGCCCUAGACCAAAGCAACAAAAAC -...--------....---.........(((((.....((((((..---....--...))))))..---..((.((((((((..........)))))).))))...)))))...... ( -26.40) >consensus CUUCGCUAUUUUGCCACUUGCUAUUUUAGUUGGCAA__CCGUUGACAGUUGGCAGCUGCAGCGGGAGUCGCGGAGGCGGGCCUUCAGCAUGUGGCCCUAGACAAUAGCAACAACCAU ((((((.....(((((((.........)).)))))...((((((.((((.....)))))))))).....))))))..(((((..........))))).................... (-28.36 = -29.98 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:04 2006