Locus 5465

Sequence ID 3L_DroMel_CAF1
Location 14,943,022 – 14,943,138
Length 116
Max. P 0.999653
window8646

overview

Window 6

Location 14,943,022 – 14,943,138
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.19
Mean single sequence MFE -35.61
Consensus MFE -33.03
Energy contribution -33.23
Covariance contribution 0.20
Combinations/Pair 1.12
Mean z-score -2.29
Structure conservation index 0.93
SVM decision value 3.84
SVM RNA-class probability 0.999653
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14943022 116 + 23771897
UA----CACACACAGCCGUUUGCCUGACUCUCUUGGGUUGCGUCUGUGUGUUCGCCCUUCGUUAUCAACCAUUUAUUGUUGGCCCUUUUUGGUUAUCUGCAGUCGACGGGCUACUACCCA
..----.((((((((.(((..(((..(.....)..))).))).))))))))..((((.(((.............((((((((((......)))))...)))))))).))))......... ( -35.21)
>DroSec_CAF1 123347 118 + 1
CACA--CACACACAGCCGUUUGCCUGACUCUCUUGGGUUGCGUCUGUGUGUUCGCCCUUCGUUAUCAACCAUUUAUUGUGGGCCCUUUUCGGUUAUCUACAGUCGACGGGCUACUACCCA
....--.((((((((.(((..(((..(.....)..))).))).))))))))..((((.(((.............((((((((((......)))...)))))))))).))))......... ( -37.11)
>DroSim_CAF1 121109 118 + 1
CACA--CACACACAGCCGUGUGCCUGACUCUCUUGGGUUGCGUCUGUGUGUUCGCCCUUCGUUAUCAACCAUUUAUUGUGGGCCCUUUUCGGUUAUCUACAGUCGACGGGCUACUACCCA
....--.((((((((.((((.(((..(.....)..))))))).))))))))..((((.(((.............((((((((((......)))...)))))))))).))))......... ( -36.21)
>DroEre_CAF1 118106 118 + 1
CACA--CACACACAGCCGCUUGCCUGGCUCUCUUGGGUUGCGUCUGUGUGUUUGCCUUUCGUUAUCAACCAUUUAUUGUGGGCCCUUUUCGGUUAUCUACAGUCGACGGGCUACUACCCA
..((--.((((((((.(((..(((..(.....)..))).))).)))))))).))..............((((.....))))((((...(((..(......)..))).))))......... ( -37.00)
>DroYak_CAF1 119232 120 + 1
CACAUACACACAGAGACGUUUGCCUGCCUCUCUUGGGUUGCGUCUGUGUAUUUGCCCUUCGUUAUCAACCAUUUAUUGUGGGCCCUUUUCGGUUAUCUACAGUCGACGGGCUACUACCCA
.........(((.((((((..((((.........)))).)))))).)))....((((.(((.............((((((((((......)))...)))))))))).))))......... ( -32.51)
>consensus
CACA__CACACACAGCCGUUUGCCUGACUCUCUUGGGUUGCGUCUGUGUGUUCGCCCUUCGUUAUCAACCAUUUAUUGUGGGCCCUUUUCGGUUAUCUACAGUCGACGGGCUACUACCCA
.......((((((((.(((..((((((.....)))))).))).))))))))..((((.(((.............((((((((((......)))...)))))))))).))))......... (-33.03 = -33.23 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:02 2006