Locus 5463

Sequence ID 3L_DroMel_CAF1
Location 14,942,379 – 14,942,498
Length 119
Max. P 0.991981
window8640

overview

Window 0

Location 14,942,379 – 14,942,498
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 96.64
Mean single sequence MFE -25.88
Consensus MFE -24.22
Energy contribution -24.46
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.79
Structure conservation index 0.94
SVM decision value 2.30
SVM RNA-class probability 0.991981
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14942379 119 + 23771897
GGGUUAACAAUCACAGUAAACGUUCCAGGAACGUGAAACCAACAACAAAUGGAUUAAUAACAAUAUUAGUUAACAACAAAUUAGCUAAUAUAUUGCACAUGACGUUGUGGGGGUGUUGA
.......(((.(((.....((((((...))))))....((.(((((..(((...(((((....((((((((((.......)))))))))))))))..)))...))))).)).)))))). ( -26.00)
>DroSec_CAF1 122705 119 + 1
GGGUUAACAAUCACAGUUAACGUUCCAGGAACGUGAAACCAACAACAAAUGGAUUAAUAACAAUAUUAGUUAACCACAAAUUAGCUAAUAUAUUGCACAUGACGUUGUGGGGGUGUUGA
.......(((.(((.....((((((...))))))....((.(((((..(((...(((((....((((((((((.......)))))))))))))))..)))...))))).)).)))))). ( -26.00)
>DroSim_CAF1 120466 119 + 1
GGGUUAACAAUCACAGUUAACGUUCCAGGAACGUGAAACCAACAACAAAUGGAUUAAUAACAAUAUUAGUUAACAACAAAUUAGCUAAUAUAUUGCACAUGACGUUGUGGGGGUGUUGA
.......(((.(((.....((((((...))))))....((.(((((..(((...(((((....((((((((((.......)))))))))))))))..)))...))))).)).)))))). ( -26.00)
>DroEre_CAF1 117452 119 + 1
CGGUUAACAAUCACAGUUAACGUUCCAGGAACGUGAAACCAACAACAAAUGAAGUAAUAACAAUAUUGGUUAACAACAAAUUAGCUAAUAUAUUGCACUUGACAUUGUGGGGGUGUUGA
...((((((.(((((((..((((((...))))))...................((((((....((((((((((.......)))))))))))))))).......)))))))...)))))) ( -25.40)
>DroYak_CAF1 118571 119 + 1
GAGUUAACAAUCACAGUUAACGUUCUAGGAACGUGAAACCAACAACAAAUGGAUUAAUAACAAUAUUAGUUAACAACAAAUUAGCUAAUAUAUUGCACAUGACGUUGUGGGGGUGUUGA
.......(((.(((.....((((((...))))))....((.(((((..(((...(((((....((((((((((.......)))))))))))))))..)))...))))).)).)))))). ( -26.00)
>consensus
GGGUUAACAAUCACAGUUAACGUUCCAGGAACGUGAAACCAACAACAAAUGGAUUAAUAACAAUAUUAGUUAACAACAAAUUAGCUAAUAUAUUGCACAUGACGUUGUGGGGGUGUUGA
.......(((.(((.....((((((...))))))....((.(((((..(((...(((((....((((((((((.......)))))))))))))))..)))...))))).)).)))))). (-24.22 = -24.46 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:56 2006