Locus 5460

Sequence ID 3L_DroMel_CAF1
Location 14,937,651 – 14,937,758
Length 107
Max. P 0.500000
window8634

overview

Window 4

Location 14,937,651 – 14,937,758
Length 107
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 83.11
Mean single sequence MFE -25.12
Consensus MFE -19.63
Energy contribution -20.52
Covariance contribution 0.89
Combinations/Pair 1.05
Mean z-score -1.35
Structure conservation index 0.78
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14937651 107 + 23771897
UGAAAUUAUACUCUCCCACGACGAAAACGAAAUCGAGGGAGAGAUUUAUUUAGGGCCUACGAAAAUUGUGGCCUUACUUCGCACACGUGCAAGGGUCGCUCAAAAAA
(((.......(((((((.(((((....))...))).))))))).......(((((((.((((...)))))))))))(((.(((....))).))).....)))..... ( -32.00)
>DroPse_CAF1 173809 91 + 1
UGAAAUUAUACUCUCCCACGAAGA------AGCCAGCGAAGAGAUUUAUUUAGGACCAAC--AAUUUGAGGCAAUACUUUGCACACGUGCAAGGGUCUC--------
...........((((...((..(.------...)..))..))))................--.....(((((....(((((((....))))))))))))-------- ( -14.70)
>DroSec_CAF1 117997 102 + 1
CGAAUUUAUACUCUCCCACGACGAA-----AAUCGAGGGAGAGAUUUAUUUAGGACCUACGAAAAUUGUGGCCUUACUUCGCACACGUGCAAGGGUCGCUCAAAAAA
.((((..((.(((((((.(((....-----..))).)))))))))..))))................((((((...(((.(((....))))))))))))........ ( -29.00)
>DroEre_CAF1 112736 101 + 1
UGAAAUUAUACUCUCCCACGACGA------AAUCGAGGGAGAGAUUUAUUUAGGACCUACCAAAACUGUGGCCUUACUUCGCACACGUGCAAGGGUCGCUCGAAAAA
..........(((((((.(((...------..))).))))))).........((.....))......((((((...(((.(((....))))))))))))........ ( -28.70)
>DroYak_CAF1 113553 101 + 1
UGAAAUUAUACUCUCCCACGACGA------AAUCGAGGGAGAGAUUUAUUUAGGGCCUACCAAAAUUGUGGCCUUACUUCGCACACGUGCAAGGGUCGCUCCGAAAA
..........(((((((.(((...------..))).))))))).......(((((((.((.......))))))))).((((((....)))..(((....)))))).. ( -31.60)
>DroPer_CAF1 166666 91 + 1
UGAAAUUAUACUCUCCCACGAAGA------AGCCAGCGAAGAGAUUUAUUUAGGACCAAC--AAUUUGAGGCAAUACUUUGCACACGUGCAAGGGUCUC--------
...........((((...((..(.------...)..))..))))................--.....(((((....(((((((....))))))))))))-------- ( -14.70)
>consensus
UGAAAUUAUACUCUCCCACGACGA______AAUCGAGGGAGAGAUUUAUUUAGGACCUAC_AAAAUUGUGGCCUUACUUCGCACACGUGCAAGGGUCGCUC_AAAAA
..........(((((((.((.............)).)))))))........................((((((...(((.(((....))))))))))))........ (-19.63 = -20.52 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:50 2006