Locus 5459

Sequence ID 3L_DroMel_CAF1
Location 14,937,062 – 14,937,181
Length 119
Max. P 0.635947
window8633

overview

Window 3

Location 14,937,062 – 14,937,181
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.11
Mean single sequence MFE -25.40
Consensus MFE -18.34
Energy contribution -19.98
Covariance contribution 1.64
Combinations/Pair 1.07
Mean z-score -1.75
Structure conservation index 0.72
SVM decision value 0.21
SVM RNA-class probability 0.635947
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14937062 119 - 23771897
UUUAUUGCAUGAAAGGUUUCUUUAUCUUUCCCUUAAAUCUGCUAUAGGGAUUUAAGAUAUUUUUGGAUUUCUUGUUGCAUGGAACCACCACU-UGGAAAUAUGGUUUUCUGUGACAGGUU
..........(((((((......))))))).(((((((((.......)))))))))..............(((((..((..((((((((...-.)).....))))))..))..))))).. ( -30.70)
>DroSec_CAF1 117406 120 - 1
UUUAUUGCAUGAAAGGUUUCUUUAUCUUUCCCUUAAAUCUGCUAUUGGAACUUAAGAUUUUUCUGGAUUUCUUGUUGCAUGGAACCACCACUUUGGAAAUAUGGCUUUCUGUGACAGGUU
..........(((((((......)))))))((..((((((..............))))))....))....(((((..((.(((((((((.....)).....))).))))))..))))).. ( -24.24)
>DroSim_CAF1 114927 120 - 1
UUUAUUGCAUGAAAGGUUUCUUUAUCUUUCCCUUAAAUCUGCUAUUGGAACUUAAGAUUUUUCUGGAUUUCUUGUUGCAUAGAACUACCACUUUGUAAAUAUGGUUUUCUGUGACAGGUU
..........(((((((......)))))))((..((((((..............))))))....))....(((((..((.(((((((..............))))))).))..))))).. ( -23.08)
>DroEre_CAF1 112178 108 - 1
UUCAUUGCAUGGAAGGUUUCCUUUUCUUCCCCUCAAAUCCCCUA---------AAGAUUUUUCUGGAUUUCUUGUUGCACGGAAC---CACUUUGGAAAUAUGGUUUUCUGUGACAGGUU
..........((((((........))))))....((((((....---------.(((....)))))))))(((((..((..((((---((...(....)..))))))..))..))))).. ( -27.60)
>DroYak_CAF1 112985 107 - 1
UUUAUUGCGUGGAAGGUUUCUUUUUCUUCCCCU-AAAUCCCCUA---------AAGAUUUUUCUGGAUUUCUUGUUGCAUGGUAC---CACUUUGGAAAUAUUGUUUUCUGUGACAGGUU
........(.((((((........)))))).).-((((((....---------.(((....)))))))))(((((..(.((....---))....(((((......))))))..))))).. ( -21.40)
>consensus
UUUAUUGCAUGAAAGGUUUCUUUAUCUUUCCCUUAAAUCUGCUAU_GG_A_UUAAGAUUUUUCUGGAUUUCUUGUUGCAUGGAAC_ACCACUUUGGAAAUAUGGUUUUCUGUGACAGGUU
..........(((((((......)))))))((..((((((..............))))))....))....(((((..((..((((((..............))))))..))..))))).. (-18.34 = -19.98 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:49 2006