Locus 5458

Sequence ID 3L_DroMel_CAF1
Location 14,936,814 – 14,936,919
Length 105
Max. P 0.933077
window8632

overview

Window 2

Location 14,936,814 – 14,936,919
Length 105
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 80.01
Mean single sequence MFE -39.65
Consensus MFE -30.65
Energy contribution -30.46
Covariance contribution -0.19
Combinations/Pair 1.30
Mean z-score -2.17
Structure conservation index 0.77
SVM decision value 1.23
SVM RNA-class probability 0.933077
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14936814 105 - 23771897
--------UAG---AUGGAGUG--GGA-UAGGAUCCUGGCCCAUCCACUUGGGGGGUGACCAACCAGGAACCUAGCGUGCUUGUGGCUCGCUUAACUAUUCCACAGGCAUAAUUCCCCA
--------...---.....(.(--(((-((((.((((((((((......))))((....))..)))))).))))..((((((((((..............))))))))))...))))). ( -45.94)
>DroSec_CAF1 117162 105 - 1
--------UAG---AUGGAGUG--GGA-UUGGAUCCUGGCCCAUCCACUUGGGGGGUGACCAACCAGGAACCUCGCGUGUUUGUGGCUCGCUUAACUAUUCCACAGGCAUAAUUCCCUA
--------...---....((.(--(((-((((.((((((((((......))))((....))..)))))).))....((((((((((..............)))))))))))))))))). ( -40.64)
>DroSim_CAF1 114683 105 - 1
--------UAG---AUGGAGUG--GGA-UAGGAUCCUGGCCCAUCCACUUGGGGGGUGACCAACCAGGAACCUCGCGUGUUUGUGGCUCGCUUAACUAUUCCACAGGCAUAAUUCCCUA
--------...---.......(--(((-.(((.((((((((((......))))((....))..)))))).)))...((((((((((..............))))))))))...)))).. ( -41.14)
>DroEre_CAF1 111918 113 - 1
CUUCGUUGUGU---AUGGAGUG--GGA-UAGGAUCCUGGCCCAUCCACUUGGGGGGCGCACAACCAGGAACCUCACAUGUUUGUGGCUCGCUUAACUAUUCCACAGGCAUAAUUCCUUA
....(((((((---.(((((((--(..-.(((.(((((((((.(((....))))))).......))))).)))((((....))))..........))))))))...)))))))...... ( -38.31)
>DroYak_CAF1 112725 113 - 1
CGUCGUUGUGG---AUGGAGUG--AGA-UAGUAUCCUGGCCCAUCCACUUGGGGGGUGCUCAGCCAGGAACCUCGCAUGUUUGUGGCUCGCUUAACUAUUCCACAGGCAUAAUUCCCUA
.......((((---((((.((.--((.-.......)).)))))))))).((((((((.....((.((....)).))((((((((((..............)))))))))).)))))))) ( -41.04)
>DroPer_CAF1 165969 119 - 1
UGACGUUGGGUAGGGUAGAGUACCAGAUCAAGAUCCUUUUCCAUCUACUUGGGGGGUGGACAGCGAAGGGCUUCGAAUGGUUUUGGCUUGUUUAACAAUUCCAUAAGAAUAAUUCUGUA
....((((..((((.((((..((((..(((((.(((((((((((((.......)))))))....))))))))).)).)))))))).))))..)))).((((.....))))......... ( -30.80)
>consensus
________UAG___AUGGAGUG__GGA_UAGGAUCCUGGCCCAUCCACUUGGGGGGUGACCAACCAGGAACCUCGCAUGUUUGUGGCUCGCUUAACUAUUCCACAGGCAUAAUUCCCUA
................(((((........(((.((((((((((......))))((....))..)))))).)))...((((((((((..............)))))))))).)))))... (-30.65 = -30.46 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:48 2006