Locus 5457

Sequence ID	3L_DroMel_CAF1
Location	14,933,435 – 14,933,536
Length	101
Max. P	0.999071

overview

Window 0

Location	14,933,435 – 14,933,536
Length	101
Sequences	6
Columns	101
Reading direction	forward
Mean pairwise identity	95.91
Mean single sequence MFE	-28.73
Consensus MFE	-27.13
Energy contribution	-26.52
Covariance contribution	-0.61
Combinations/Pair	1.12
Mean z-score	-2.11
Structure conservation index	0.94
SVM decision value	3.36
SVM RNA-class probability	0.999071
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14933435 101 + 23771897
UGAAAUAACGGACAAGUCCCUUGUCCGUUUGGGUAUUUCCAGCGGCGAGAUUGUAUCUCCGAGAUAUGCCAAUCCAUUGUUUGUCCAUAUCCUCCGUCUUU
......((((((((((...))))))))))((((....))))((((.(((((...)))))...((((((.(((........)))..))))))..)))).... ( -28.00)
>DroSec_CAF1 114123 101 + 1
UGAAAUAACGGACAAGUCCCUUGUCCGUUUGGGUAUUUCCAGCGGCGAGAUUGUAUCUCCGAGAUAUGCCAAUCCAUUGUUUGUCCAUAUCCUCCGUCUUU
......((((((((((...))))))))))((((....))))((((.(((((...)))))...((((((.(((........)))..))))))..)))).... ( -28.00)
>DroSim_CAF1 111356 101 + 1
UGAAAUAACGGACAAGUCCCUUGUCCGUUUGGGUAUUUCCAGCGGCGAGAUUGUAUCUCCGAGAUAUGCCAAUCCAUUGUUUGUCCAUAUCCUCCGUCUUU
......((((((((((...))))))))))((((....))))((((.(((((...)))))...((((((.(((........)))..))))))..)))).... ( -28.00)
>DroEre_CAF1 109164 101 + 1
UGAAAUAACGGACAAGUCCCUUGUCCGCUUGGGUAUUUCCAGCGGCGAGAUUGUAUCUCCGAGAUACGCCAAUCCAUUGUUUGUCCAUAUCCUCCGUCUUU
.........(((((((...((((.(((((.(((....))))))))))))...(((((.....)))))............)))))))............... ( -29.60)
>DroYak_CAF1 109620 101 + 1
UGAAAUAACGGACAAGUCCCUUGUCCGCAUGGGUAUUUCCAGCGGCGAGAUUGUAUCUGCGAGAUACGCCAAUCCAUUGUUUGUCCAUAUCCUCCGUCUUU
.........(((((((...((((.((((.((((....))))))))))))...(((((.....)))))............)))))))............... ( -29.60)
>DroAna_CAF1 99901 101 + 1
UGAAAUAACGGACAAGUCCCUUGUUCGUUUGGGUAUUUCCAGCGGCGAGAUUGUAUCUCUCGGAUACGCAAACCUAUUGUUUGUCCAUAUCCUCCGUCUUU
......((((((((((...))))))))))((((....))))((((.(((((...)))))..(((((.((((((.....))))))...))))).)))).... ( -29.20)
>consensus
UGAAAUAACGGACAAGUCCCUUGUCCGUUUGGGUAUUUCCAGCGGCGAGAUUGUAUCUCCGAGAUACGCCAAUCCAUUGUUUGUCCAUAUCCUCCGUCUUU
.........(((((((...((((.((((.((((....))))))))))))...(((((.....)))))............)))))))............... (-27.13 = -26.52 +  -0.61)

alignment

secondary structure

dotplot

Window 1

Location	14,933,435 – 14,933,536
Length	101
Sequences	6
Columns	101
Reading direction	reverse
Mean pairwise identity	95.91
Mean single sequence MFE	-30.67
Consensus MFE	-27.94
Energy contribution	-27.83
Covariance contribution	-0.11
Combinations/Pair	1.08
Mean z-score	-2.46
Structure conservation index	0.91
SVM decision value	3.18
SVM RNA-class probability	0.998667
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14933435 101 - 23771897
AAAGACGGAGGAUAUGGACAAACAAUGGAUUGGCAUAUCUCGGAGAUACAAUCUCGCCGCUGGAAAUACCCAAACGGACAAGGGACUUGUCCGUUAUUUCA
..((.(((.(((((((..(((........))).)))))))..(((((...))))).))))).((((((.....(((((((((...))))))))))))))). ( -30.20)
>DroSec_CAF1 114123 101 - 1
AAAGACGGAGGAUAUGGACAAACAAUGGAUUGGCAUAUCUCGGAGAUACAAUCUCGCCGCUGGAAAUACCCAAACGGACAAGGGACUUGUCCGUUAUUUCA
..((.(((.(((((((..(((........))).)))))))..(((((...))))).))))).((((((.....(((((((((...))))))))))))))). ( -30.20)
>DroSim_CAF1 111356 101 - 1
AAAGACGGAGGAUAUGGACAAACAAUGGAUUGGCAUAUCUCGGAGAUACAAUCUCGCCGCUGGAAAUACCCAAACGGACAAGGGACUUGUCCGUUAUUUCA
..((.(((.(((((((..(((........))).)))))))..(((((...))))).))))).((((((.....(((((((((...))))))))))))))). ( -30.20)
>DroEre_CAF1 109164 101 - 1
AAAGACGGAGGAUAUGGACAAACAAUGGAUUGGCGUAUCUCGGAGAUACAAUCUCGCCGCUGGAAAUACCCAAGCGGACAAGGGACUUGUCCGUUAUUUCA
......((((...((((((((.............(((((.....)))))..((((.(((((((......)).)))))....)))).))))))))..)))). ( -32.20)
>DroYak_CAF1 109620 101 - 1
AAAGACGGAGGAUAUGGACAAACAAUGGAUUGGCGUAUCUCGCAGAUACAAUCUCGCCGCUGGAAAUACCCAUGCGGACAAGGGACUUGUCCGUUAUUUCA
......((((...((((((((.............(((((.....)))))..((((.(((((((......))).))))....)))).))))))))..)))). ( -32.20)
>DroAna_CAF1 99901 101 - 1
AAAGACGGAGGAUAUGGACAAACAAUAGGUUUGCGUAUCCGAGAGAUACAAUCUCGCCGCUGGAAAUACCCAAACGAACAAGGGACUUGUCCGUUAUUUCA
..((.(((.(((((((..(((((.....))))))))))))((((.......)))).))))).((((((.....(((.(((((...))))).))))))))). ( -29.00)
>consensus
AAAGACGGAGGAUAUGGACAAACAAUGGAUUGGCAUAUCUCGGAGAUACAAUCUCGCCGCUGGAAAUACCCAAACGGACAAGGGACUUGUCCGUUAUUUCA
..((.(((.(((((((..(((.(....).))).)))))))..(((((...))))).))))).((((((.....(((((((((...))))))))))))))). (-27.94 = -27.83 +  -0.11)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:47 2006