Locus 5455

Sequence ID 3L_DroMel_CAF1
Location 14,932,676 – 14,932,783
Length 107
Max. P 0.691765
window8628

overview

Window 8

Location 14,932,676 – 14,932,783
Length 107
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 85.69
Mean single sequence MFE -35.22
Consensus MFE -25.64
Energy contribution -26.24
Covariance contribution 0.60
Combinations/Pair 1.14
Mean z-score -1.81
Structure conservation index 0.73
SVM decision value 0.33
SVM RNA-class probability 0.691765
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14932676 107 - 23771897
CGCAGUGAAGCAGAGUCGAGGGGUUAAAUUGGGGUCUACACUUGCCU-----GGCUGUUGAUUGUCAGAAGACGUGACCUGAUUUGACCCUCUCCACACUUUACACAUAUCG
....((((((....((.((((((((((((..((.....(((((..((-----(((........)))))..)).))).))..))))))))).))).)).))))))........ ( -36.80)
>DroSec_CAF1 113363 107 - 1
CGCAGUGAAGCAGAGUCAAGGGGUUAAAUUGGGGUCCACACUUGCCA-----GGCUCUUGAUUGUCAGAAGACGUGACCUGAUUUGACCCUCUCCACACUUUACACAUAUCU
....((((((..(((....((((((((((..((...(((......((-----(....)))...(((....)))))).))..)))))))))))))....))))))........ ( -31.60)
>DroSim_CAF1 110598 107 - 1
CGCAGUGAAGCAGAGUCCAGGGGUUAAAUUGGGGCCCACACUUGCCU-----GGCUCUUGAUUGUCAGAAGACGUGACCUGAUUUGACCCUCUCCACACUUUACACAUAUCG
....((((((..(((....((((((((((..((...(((.(((..((-----(((........))))))))..))).))..)))))))))))))....))))))........ ( -34.50)
>DroEre_CAF1 108442 96 - 1
CGCUGUAAGGCA--GUCAAGGGGUUAAAUUGGGGUCCACACUUUCGU-----GGCUCUUGAUUGCCAGAAGUCGUGACCUGAUUUGACCCUCUCCAC---------GCAUCG
.(((....))).--((..(((((((((((..((...((((((((..(-----(((........))))))))).))).))..))))))))).))..))---------...... ( -35.80)
>DroYak_CAF1 108840 112 - 1
CGCAGUGACUCAGAGUCAAGGGGUUAAGUUGGGGCCCACACUUUCAUGGCAUGGCUCUUGAUUGCCUGAAGACGUGACCUGAUUUGACCCUCUCCACACGUUACACACAUCG
....(((((...(((....((((((((((..((...(((..(((((.((((...(....)..)))))))))..))).))..))))))))))))).....)))))........ ( -37.40)
>consensus
CGCAGUGAAGCAGAGUCAAGGGGUUAAAUUGGGGUCCACACUUGCCU_____GGCUCUUGAUUGUCAGAAGACGUGACCUGAUUUGACCCUCUCCACACUUUACACAUAUCG
....((((((....((..(((((((((((..((...(((.............(((........))).(....)))).))..))))))))).))..)).))))))........ (-25.64 = -26.24 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:44 2006