Locus 5453

Sequence ID 3L_DroMel_CAF1
Location 14,927,895 – 14,928,014
Length 119
Max. P 0.698007
window8626

overview

Window 6

Location 14,927,895 – 14,928,014
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 82.87
Mean single sequence MFE -20.11
Consensus MFE -15.16
Energy contribution -15.33
Covariance contribution 0.17
Combinations/Pair 1.16
Mean z-score -1.81
Structure conservation index 0.75
SVM decision value 0.34
SVM RNA-class probability 0.698007
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14927895 119 + 23771897
ACCAGAAAGUCUCUCAUCAAUCUUCUAACAAUAUCGUUUGUAGCUGAUUGUUGGGCUGUACUCCCAGAACGCCGCCCCCAAAAAUGAAAAAAAAAAAUACGUUAAAAAUUUUCUAAUCU
...(((((((.......(((((..(((.(((......))))))..)))))..((((.((..((...))..)).))))..............................)))))))..... ( -18.50)
>DroPse_CAF1 165788 96 + 1
ACCAAAAAGUCUCCCAUCAAUCUUUUAACAAUAUCGGUUGUAGAUGAUUGUUGGGUUGCACUCCCAAAACGCC----CCAGA-------A---AAA--AUGCCCAACAUUUU-------
........((..((((.(((((.((((.((((....)))))))).))))).))))..))..............----.....-------.---(((--(((.....))))))------- ( -18.90)
>DroSim_CAF1 105759 116 + 1
ACCAGAAAGUCUCCCAUCAAUCUUCUAACAAUAUCGUUUGUAGCUGAUUGUUGGGCUAUACUCCCAGAACGCCGCCCCCAAAAAUGAAAA---AAAAUACGUUAAAAAUUUUCUAAUCU
...(((((((..((((.(((((..(((.(((......))))))..))))).))))............((((...................---......))))....)))))))..... ( -18.71)
>DroEre_CAF1 103620 114 + 1
ACCAGAAAGUCUCCCAUCAAUCUUCUGACAAUAUCGUUUGUAGCUGAUUGUUGGGCUGUACUCCCAGAAAUCCUCCCCCAAAAAUGGAAA---AAA--ACGUUAAAAAUUUUCUAAUCU
...(((((((..((((.(((((..(((.(((......))))))..))))).))))(((......)))...(((............)))..---...--.........)))))))..... ( -21.30)
>DroYak_CAF1 103806 116 + 1
ACCAGAAAGUCGCCCAUCAAUCUUCUAACAAUAUCGUUUGUAGCUGAUUGUAGGGCUGUACUCCCAGAACGCCUCCCCCAAAAAUGGAAA---AAAAUACGUUAAAAAUUUUCUAAUCU
...(((((((.((((..(((((..(((.(((......))))))..)))))..))))...........((((......(((....)))...---......))))....)))))))..... ( -22.56)
>DroAna_CAF1 94812 106 + 1
ACCAGAAAGUCUAACAUCAAUCUUCUAACAAUAUCGUUUGUAGCUGAUUGUUGGGUUGAACUCCCAAAACGCC--CCCCAAAAAUAA-----------AUGUUAAAAAUUUUCUAAUAC
...(((((((.(((((((((((..(((.(((......))))))..)))))(((((.......)))))......--............-----------))))))...)))))))..... ( -20.70)
>consensus
ACCAGAAAGUCUCCCAUCAAUCUUCUAACAAUAUCGUUUGUAGCUGAUUGUUGGGCUGUACUCCCAGAACGCC_CCCCCAAAAAUGAAAA___AAA__ACGUUAAAAAUUUUCUAAUCU
...(((((((..((((.(((((..(((.(((......))))))..))))).))))(((......)))........................................)))))))..... (-15.16 = -15.33 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:42 2006