Locus 5451

Sequence ID 3L_DroMel_CAF1
Location 14,922,581 – 14,922,682
Length 101
Max. P 0.771385
window8623

overview

Window 3

Location 14,922,581 – 14,922,682
Length 101
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 80.82
Mean single sequence MFE -19.12
Consensus MFE -11.47
Energy contribution -11.17
Covariance contribution -0.30
Combinations/Pair 1.30
Mean z-score -2.14
Structure conservation index 0.60
SVM decision value 0.53
SVM RNA-class probability 0.771385
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14922581 101 - 23771897
ACACUUCUUA---------AAUCACAUAUGAAUGAAC------ACCUAUCGUAAAGGAUCAAUUACUAUAUCAAAAAGAUCUCCU-UGUUAAACUGAGAUCAUUUAUCACAUAUGGA
..........---------.....((((((..(((..------.(((.......)))....................((((((..-.(.....).)))))).....))))))))).. ( -14.90)
>DroSec_CAF1 103173 101 - 1
ACACCUCUUA---------AAUCACAUAUGAAUGAAC------ACCUAUCGUAAGGGAUCAAUUACUAUAUCAAACAGAUCUCCU-UGUUAAACUGAGAUCAUUUAUCACAUAUGGA
..........---------.....((((((..(((.(------.(((......)))).)))................((((((..-.(.....).))))))........)))))).. ( -17.10)
>DroSim_CAF1 100495 101 - 1
ACACCUCUUA---------AAUCACAUAUGAAUGAAC------ACCUAUCGUAAAGGAUCAAUUACUAUAUCAAACAGAUCUCCU-UGUUAAACUGAGAUCAUUUAUCACAUAUGGA
..........---------.....((((((..(((..------.(((.......)))....................((((((..-.(.....).)))))).....))))))))).. ( -14.90)
>DroEre_CAF1 98640 101 - 1
GCACUUCCUU---------AAUCACAUGUGAAUGAAC------ACCUAUCGUAAAGUAUCAAUUACUAUAUCAAACAGAUCUCCU-UGUUAAACUGAGAUCAUUUAUCACAUAUGGA
..........---------..(((.((((((.((((.------.......(((.((((.....)))).)))......((((((..-.(.....).)))))).)))))))))).))). ( -17.20)
>DroYak_CAF1 98621 101 - 1
GUACUUCUUU---------AAUCACAUAUGAGUGAAC------ACCUAUCGCAGAGGUUCAAUUACAAUAUCAAACAGAUCUUCU-UGUUAAACUGAGAUCAUUUAUCACAUGUGGA
..........---------..((((((.(((.(((((------..((.....))..)))))................((((((..-(.....)..)))))).....))).)))))). ( -19.10)
>DroAna_CAF1 89877 107 - 1
ACGAUUCGUUAAACCUACACAUCACAUAUGAAUGAGCUGGGGUUCCUAUCAAAGGUGUUCAAUUA----------GAGAACUUUUGUGUGAAACCCAGAUCAUUUAUCACAUGUGGA
.....................((((((((((((((.(((((.(((.((.(((((((.(((.....----------))).))))))))).))).))))).))))))))...)))))). ( -31.50)
>consensus
ACACUUCUUA_________AAUCACAUAUGAAUGAAC______ACCUAUCGUAAAGGAUCAAUUACUAUAUCAAACAGAUCUCCU_UGUUAAACUGAGAUCAUUUAUCACAUAUGGA
........................((((((.(((((........(((.......)))....................((((((............)))))).)))))..)))))).. (-11.47 = -11.17 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:39 2006