Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,575,554 – 1,575,651 |
Length | 97 |
Max. P | 0.727888 |
Location | 1,575,554 – 1,575,651 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.07 |
Mean single sequence MFE | -24.55 |
Consensus MFE | -15.75 |
Energy contribution | -15.95 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.17 |
Mean z-score | -1.89 |
Structure conservation index | 0.64 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1575554 97 + 23771897 UCUGCCCGUAUCAGAUUUCAAAUGCAGCGCCAUUCG-----------------------UUUGGCAUGCACUUGCUUCCGAGAUAACAAAUUGCCAUGGAAAUUGAAAUUCUAUAUGUUU ......(((((..((((((((.((((..((((....-----------------------..)))).)))).....(((((.(.(((....))).).))))).))))))))..)))))... ( -23.30) >DroSec_CAF1 19818 97 + 1 UCUUCCCGUAUCAGAUUUCAAAUGCAGCGCCAUUCG-----------------------UUUGGCAUGCACUUGCUUCCGAGAUAACAAAUUGCCAUGGAAAUUGAAAUUCUAUAUGUUU ......(((((..((((((((.((((..((((....-----------------------..)))).)))).....(((((.(.(((....))).).))))).))))))))..)))))... ( -23.30) >DroSim_CAF1 20182 97 + 1 UCUUCCCGUAUCAGAUUUCAAAUGCAGCGCCAUUCG-----------------------UUUGGCAUGCACUUGCUUCCGAGAUAACAAAUUGCCAUGGAAAUUGAAAUUCUAUAUGUUU ......(((((..((((((((.((((..((((....-----------------------..)))).)))).....(((((.(.(((....))).).))))).))))))))..)))))... ( -23.30) >DroEre_CAF1 26854 95 + 1 U--CCCCAUAUCGUAUUUCAAACGCAGCGCCACUCG-----------------------CUUGGCAUGCACUUGCUUCCGAGAUAACAAAUUGCCAUGGAAAUGGAAAUUCCAUAUGCUU .--...(((((.(.(((((....(((..((((....-----------------------..)))).))).((((....))))............(((....)))))))).).)))))... ( -19.40) >DroYak_CAF1 20893 95 + 1 U--CCCCAUAUUGAAUUUCAAACGCAGCGCCACUCG-----------------------CCUGGCAUGCACUUGCUACCGAGAUAGCAAAUUGCCAUGGAAACGGAAAUUCUAUAUGUUU .--...(((((.(((((((....(((..((((....-----------------------..)))).)))..((((((......)))))).......((....))))))))).)))))... ( -27.10) >DroAna_CAF1 28462 118 + 1 U--CCUCGUAUUGAGUUUCAAACGAAGCGCCCUGCCUGCCGGCCAGUUGCCAGUUGCCAGUUUGCAUUCACUUGCUUCCGAGAUAACAAAUUGCAAUUGAAAUUGAAAUUCUAUAUGUUU .--...(((((.(((((((((.....(((.(..(((....)))..).)))(((((((.((((((......((((....))))....)))))))))))))...))))))))).)))))... ( -30.90) >consensus U__CCCCGUAUCAGAUUUCAAACGCAGCGCCAUUCG_______________________UUUGGCAUGCACUUGCUUCCGAGAUAACAAAUUGCCAUGGAAAUUGAAAUUCUAUAUGUUU ......(((((..((((((((..(((..((((.............................)))).))).((((....))))....................))))))))..)))))... (-15.75 = -15.95 + 0.20)
Location | 1,575,554 – 1,575,651 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.07 |
Mean single sequence MFE | -28.68 |
Consensus MFE | -15.98 |
Energy contribution | -16.57 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.22 |
Mean z-score | -2.27 |
Structure conservation index | 0.56 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.702122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1575554 97 - 23771897 AAACAUAUAGAAUUUCAAUUUCCAUGGCAAUUUGUUAUCUCGGAAGCAAGUGCAUGCCAAA-----------------------CGAAUGGCGCUGCAUUUGAAAUCUGAUACGGGCAGA .....(((.(((.......))).)))....((((((...(((((..(((((((((((((..-----------------------....))))).))))))))...)))))....)))))) ( -25.60) >DroSec_CAF1 19818 97 - 1 AAACAUAUAGAAUUUCAAUUUCCAUGGCAAUUUGUUAUCUCGGAAGCAAGUGCAUGCCAAA-----------------------CGAAUGGCGCUGCAUUUGAAAUCUGAUACGGGAAGA ..................((((((((((.....))))).(((((..(((((((((((((..-----------------------....))))).))))))))...)))))...))))).. ( -28.10) >DroSim_CAF1 20182 97 - 1 AAACAUAUAGAAUUUCAAUUUCCAUGGCAAUUUGUUAUCUCGGAAGCAAGUGCAUGCCAAA-----------------------CGAAUGGCGCUGCAUUUGAAAUCUGAUACGGGAAGA ..................((((((((((.....))))).(((((..(((((((((((((..-----------------------....))))).))))))))...)))))...))))).. ( -28.10) >DroEre_CAF1 26854 95 - 1 AAGCAUAUGGAAUUUCCAUUUCCAUGGCAAUUUGUUAUCUCGGAAGCAAGUGCAUGCCAAG-----------------------CGAGUGGCGCUGCGUUUGAAAUACGAUAUGGGG--A ..((.(((((((.......)))))))))...((.((((.(((....(((((((((((((..-----------------------....))))).)))))))).....))).)))).)--) ( -27.90) >DroYak_CAF1 20893 95 - 1 AAACAUAUAGAAUUUCCGUUUCCAUGGCAAUUUGCUAUCUCGGUAGCAAGUGCAUGCCAGG-----------------------CGAGUGGCGCUGCGUUUGAAAUUCAAUAUGGGG--A ...(((((.((((((((((.....((((((((((((((....)))))))))...)))))((-----------------------((.....)))))))...))))))).)))))...--. ( -32.50) >DroAna_CAF1 28462 118 - 1 AAACAUAUAGAAUUUCAAUUUCAAUUGCAAUUUGUUAUCUCGGAAGCAAGUGAAUGCAAACUGGCAACUGGCAACUGGCCGGCAGGCAGGGCGCUUCGUUUGAAACUCAAUACGAGG--A ...................((((.((((..((((......)))).)))).)))).((...(((.(..(((((.....)))))..).))).)).(((((((((.....))).))))))--. ( -29.90) >consensus AAACAUAUAGAAUUUCAAUUUCCAUGGCAAUUUGUUAUCUCGGAAGCAAGUGCAUGCCAAA_______________________CGAAUGGCGCUGCAUUUGAAAUCCGAUACGGGG__A ...................(((((((((.....))))).(((((..(((((((((((((.............................))))).))))))))...)))))...))))... (-15.98 = -16.57 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:59 2006