| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,921,454 – 14,921,566 |
| Length | 112 |
| Max. P | 0.722322 |
| Location | 14,921,454 – 14,921,566 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.52 |
| Mean single sequence MFE | -25.46 |
| Consensus MFE | -10.00 |
| Energy contribution | -10.06 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14921454 112 - 23771897 AAGGUGUUUGUUUUCUUGAUCUCAGCAUCAAUGAAAAUGACGAUAACGACUUAACGUACAUGACU----AUGAAAAUGCAUGCGU--UUCGUAAUUUUCAUUCCGU--UUUAGCAGGCAA ....((((((((.....(((......)))(((((((((.((((.((((((.....)).((((.(.----((....))))))))))--))))).)))))))))....--...)))))))). ( -22.40) >DroSec_CAF1 102114 102 - 1 AAGGUGUUUGUUUUCUUGAUCUUAGCAUCAAUGAAAAUGACGAUAGC--------GUAG----------AUGAAAAUGCAUGCGUGUCUCGUCAUUUUCAUUCUUUUUUUUAACAAUCUA ..((((((.(((.....)))...))))))((((((((((((((..((--------(((.----------((....))...)))))...)))))))))))))).................. ( -27.40) >DroSim_CAF1 99381 100 - 1 AAGGUGUUUGUUUUCUUGAUCUUAGCAUCAAUGAAAAUGACGAUAAC--------GUAG----------AUGAAAAUGCAUGCGUGUCUCGACAUUUUCAUUCUUU--UUUAACAAUCUA ..((((((.(((.....)))...))))))((((((((((.(((..((--------(((.----------((....))...)))))...))).))))))))))....--............ ( -21.70) >DroEre_CAF1 97545 112 - 1 AUGGUGUUUGUAUUCUUGAUCCCAGCAUCAAUGAAAAUAACUAUAAUGACUGUACGUACAUUACUGUGUACG----UGCAUG--UGUCUGGUCAUUUUCAUUCUUU--UAUAUCAGGCUA .(((((((.(.(((...))).).)))))))((((((((.((((....((((((((((((((....)))))))----))))..--.))))))).)))))))).....--............ ( -29.10) >DroYak_CAF1 97487 115 - 1 AAGGUGUUUGUAUUCUUGAUCUCAGCAUCAAUGAAAAUAACGAUAAUGACUGUACGUUCUCUACUGUAUAUGUAGAUGCAUG--UGUCUGGUCAUUUUCAUUCUGU--UAUAGCAGGC-A ....(((((((.((((((((......))))).))).(((((((.(((((((((((((.((((((.......))))).).)))--)).).))))))).....)).))--))).))))))-) ( -26.70) >consensus AAGGUGUUUGUUUUCUUGAUCUCAGCAUCAAUGAAAAUGACGAUAACGACU__ACGUAC___ACU____AUGAAAAUGCAUGCGUGUCUCGUCAUUUUCAUUCUUU__UUUAACAGGCUA ..((((((...............))))))(((((((((.((((..(((......)))............(((......))).......)))).))))))))).................. (-10.00 = -10.06 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:36 2006