Locus 5448

Sequence ID 3L_DroMel_CAF1
Location 14,918,969 – 14,919,065
Length 96
Max. P 0.543834
window8619

overview

Window 9

Location 14,918,969 – 14,919,065
Length 96
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 91.63
Mean single sequence MFE -22.52
Consensus MFE -19.52
Energy contribution -19.11
Covariance contribution -0.41
Combinations/Pair 1.32
Mean z-score -1.39
Structure conservation index 0.87
SVM decision value 0.02
SVM RNA-class probability 0.543834
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14918969 96 - 23771897
UAAAUUGUAUUAGCAACGCAUCCUC-UUUUUAUUGGCCUUGUCCGGCAAUUUCAAUGCUAAAAGGCUGCAAAGGACUCUGAAAUUGCUCAAGGCCGU
....((((....)))).........-........(((((((...(((((((((..(((.........))).((....)))))))))))))))))).. ( -24.60)
>DroSec_CAF1 101214 96 - 1
UAAAUUGUAUUAGCAACGCAUCCUC-UUUUUAUUAGCCUUGUCCGGCAAUUUCAAUGCUAAAAGGCUGCAUAGGACUCUGAAAUUGCUCAAGGCUGU
....((((....)))).........-.......((((((((...((((((((((((((.........)))).......)))))))))))))))))). ( -24.71)
>DroSim_CAF1 98430 96 - 1
UAAAUUGUAUUAGCAACGCAUCCUC-UUUUUAUUGGCCUUGUCCGGCAAUUUCAAUGCUAAAAGGCAGCAAAGGACUCUGAAAUUGCUCAAGGCUGU
....((((....)))).........-........(((((((...((((((((((.((((....))))...........))))))))))))))))).. ( -23.70)
>DroEre_CAF1 96502 96 - 1
UAAAUUGUAUUAGCAACGCAUCCUC-UUUUUAUUGGCCUUGUCCGGCAAUUUCAAUGCUAAAAGGCUGCAAAGGACUCUGAAAUUGCUCAAGGCCGU
....((((....)))).........-........(((((((...(((((((((..(((.........))).((....)))))))))))))))))).. ( -24.60)
>DroYak_CAF1 96035 96 - 1
UAAAUUGUAUUAGCAACGCAUCCUC-UUUUUAUUAGCCUUGACCGGCAAUUUCAAUGCUAAAAGGCUGCAAAGGACUCUGAAAUUGCUCAAGGCCGU
....((((....)))).........-.........(((((((...((((((((..(((.........))).((....)))))))))))))))))... ( -20.90)
>DroAna_CAF1 88365 97 - 1
UAAAUUGUAUUAGCAACGCAUUCCCAUUUUUAUUGGCCUUGUCCGGUAAAUGUAAUGUUAAAUGGCUAUAAAGGACUUGAAAAUUGUCCAAGGACAU
.....(((..((((...(((((.(....((((((((......)))))))).).)))))......))))....((((.........))))....))). ( -16.60)
>consensus
UAAAUUGUAUUAGCAACGCAUCCUC_UUUUUAUUGGCCUUGUCCGGCAAUUUCAAUGCUAAAAGGCUGCAAAGGACUCUGAAAUUGCUCAAGGCCGU
....((((....)))).................((((((((...((((((((((..(((....)))............)))))))))))))))))). (-19.52 = -19.11 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:35 2006