Locus 5445

Sequence ID 3L_DroMel_CAF1
Location 14,918,001 – 14,918,119
Length 118
Max. P 0.637972
window8614

overview

Window 4

Location 14,918,001 – 14,918,119
Length 118
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 91.72
Mean single sequence MFE -30.52
Consensus MFE -27.12
Energy contribution -27.20
Covariance contribution 0.08
Combinations/Pair 1.13
Mean z-score -1.23
Structure conservation index 0.89
SVM decision value 0.22
SVM RNA-class probability 0.637972
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14918001 118 + 23771897
UUAUAAAAAUGGUGAACGAUCUUUUAGGAGGCUAUGACGAAGGCGAAACUUCGGAAAGCCUGUGGAGCUAUUGUCUAUCUUAGGACAGAAA-AAAUGUUUUCAAAUCGGCAAUGAAACG
...(((((((.(....).)).)))))(.(((((.(..(((((......)))))..)))))).)...(((..(((((......)))))((((-(....))))).....)))......... ( -25.60)
>DroSec_CAF1 100246 119 + 1
UCACAAAAAUGGUGGACGAUCUUUUAGAAGGCUAUGACGAAGGCGAAACUUCGGAAAGCCUGUGGAGCUAUUGUCUAUCUUAGGGCAGAAAAAAAUGUUUUCAAAUCGGCAAUGAAACG
..........((((((((((..(((...(((((.(..(((((......)))))..))))))...)))..))))))))))(((..((.(((((.....)))))......))..))).... ( -30.30)
>DroSim_CAF1 97484 118 + 1
UCACAAAAAUGGUGGACGAUCUUUUGGGAGGCUAUGACGAAGGCGAAACUUCGGAAAGCCUGUGGAGCUAUUGUCUAUCUCGGGACAGAAA-AAAUGUUUUCAAAUCGGCAAUGAAACG
(((.......((((((((((..(((.(.(((((.(..(((((......)))))..)))))).).)))..))))))))))((((....((((-(....)))))...))))...))).... ( -33.30)
>DroEre_CAF1 95515 118 + 1
UCACAAAAAUGGUGGACAAUCUUUUAGGAGGCUAUGACGAAGGCGAAACUUGGGAAAGCCUGUGGAGCUAUUGUCCAUCUCGGGACAGAGA-AAAUGUUUUCGAAUCGCCAACGGAACG
..........((((((((((..(((.(.(((((.(..(.(((......))).)..)))))).).)))..))))))))))..((((..((((-(....)))))...)).))......... ( -31.70)
>DroYak_CAF1 95038 118 + 1
UUACAAAAAUGGUGGACGAUCUUUUAGGAGGCAAUGACGAAGGCGAAACUUCGGAAAGCCUGUGGAGCUAUUGUCUUUCUCAGGACAGAGA-AAAUGUUUUCCAAUCGCCAAAAGAACG
.........(((((((((((..(((.(.((((.....(((((......)))))....)))).).)))..))))))((((((......))))-))............)))))........ ( -31.70)
>consensus
UCACAAAAAUGGUGGACGAUCUUUUAGGAGGCUAUGACGAAGGCGAAACUUCGGAAAGCCUGUGGAGCUAUUGUCUAUCUCAGGACAGAAA_AAAUGUUUUCAAAUCGGCAAUGAAACG
..........((((((((((..(((.(.(((((.(..(((((......)))))..)))))).).)))..))))))))))..((((((........)))))).................. (-27.12 = -27.20 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:30 2006