Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,911,196 – 14,911,313 |
Length | 117 |
Max. P | 0.860455 |
Location | 14,911,196 – 14,911,313 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.70 |
Mean single sequence MFE | -42.90 |
Consensus MFE | -32.58 |
Energy contribution | -33.70 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.22 |
Mean z-score | -2.02 |
Structure conservation index | 0.76 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14911196 117 + 23771897 GAAGGCUUGGAGUUCUUGAAGACCUUCUUGAUGGUCUUCAGCAGCUUCUUCAGGUUGGUGGAGGCGCCGGUAAGAGAUUUCUUCUCUGUCACUCCA---UUGAAGUUGGAAACAAGAGCG ....((((((((((.(((((((((........))))))))).))))))(((((.(..((((((..((.....(((((.....)))))))..)))))---)..)..))))).....)))). ( -43.50) >DroSec_CAF1 93552 117 + 1 GAAGGCUUGGAGUUCUUGAAGAUCUUCUUGAUGGUCUUCAGCAGCUUCUUCAGGUUGGUAGAGGCGCCGGUGAGAGAUUUCUUCUCUGGCAUUCCA---UUAAAGUUGGAAACAAGAGCG ....(((((((((..(((((((((........)))))))))..((((((((.....)).))))))(((((.((.((....)))).)))))))))).---......(((....))))))). ( -40.20) >DroSim_CAF1 90669 117 + 1 GAAGGCUUGGAGUUCUUGAAGAUCUUCUUUAUGGUCUUCAGCAGCUUCUUCAGGUUGGUGGAGGCGCCGGUGAGAGACUUCUUCUCUGGCACUCCA---UUAAAGUUGGAAACAAGAGCG ....((((((((((.(((((((((........))))))))).))))))(((((.(((((((((..(((((.((.((....)))).))))).)))))---))))..))))).....)))). ( -47.00) >DroYak_CAF1 86718 117 + 1 GCAGGCUUCGGGUUCUUGAAGAUCUUCUUGAUGGUCUUCAGCAGCUUCUUCAGGUUGGUGGAGGCGCCGGUAAGAGAUUUCUUCUCUGGCACACCG---UUGAAGUUGGAAACGAGAGCG ....((((((..((((((((((((........)))))))))(((((((....((((((((....)))))((.(((((.....))))).))..))).---..)))))))))).))).))). ( -41.60) >DroPer_CAF1 141216 120 + 1 CCCGCCUUCGAGUGGGUGAAGAUCCGCCUGAUGCUCUUUAGCAGCUUCUUCAUGUUGGUGGCGGCGCCGGUGAGAGAGCUCUUCUCCGGCACACCAGAGCUGGAGUUGAAACGAUGAGCU .......(((.((((((....)))))).))).((((.....(((((((......((((((.....(((((.((((....))))..))))).))))))....))))))).......)))). ( -42.20) >consensus GAAGGCUUGGAGUUCUUGAAGAUCUUCUUGAUGGUCUUCAGCAGCUUCUUCAGGUUGGUGGAGGCGCCGGUGAGAGAUUUCUUCUCUGGCACUCCA___UUGAAGUUGGAAACAAGAGCG ....((((.(((((.(((((((((........))))))))).)))))((((((.....(((((..(((((.((((....))))..))))).)))))...))))))(((....))))))). (-32.58 = -33.70 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:29 2006