| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,909,762 – 14,909,852 |
| Length | 90 |
| Max. P | 0.587235 |
| Location | 14,909,762 – 14,909,852 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 89.26 |
| Mean single sequence MFE | -18.38 |
| Consensus MFE | -16.33 |
| Energy contribution | -16.20 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14909762 90 - 23771897 UAACUCACAUGCUAGCCCUUCAAGUAGGCAACACAUUGUGCAAAAGUACAGCAAGCAGCUAAAUUUCUAGCUUGUAACUUUUUUUAUGCU ......(((((((.((.......((.(....)))..(((((....))))))).))))((((......)))).)))............... ( -16.60) >DroSec_CAF1 91847 90 - 1 UAACUCACAUGCGAGCUCUUCAAGUAGGCAACACAUUGUGCAAAAGUACAGCAAGCAGACAAUUUUCUAGCUUGUAACUUUCUUUAUGUU .........(((..(((.....)))..)))..(((((((((....)))))(((((((((......))).))))))..........)))). ( -17.30) >DroSim_CAF1 88935 90 - 1 UAACUCACAUGCUAGCCCUUCAAGUAGGCAACACAUUGUGCAAAAGUACAGCAAGCAGACAAUUUUCUAGCUUGUAACUUUCUUUAUGUC ......(((((...(((.........))).......(((((....)))))(((((((((......))).)))))).........))))). ( -18.00) >DroYak_CAF1 84539 90 - 1 AAACUGGCAUACAAGCCCUUCAAGUAGGCAAUAGAUUGUGCAAAAGUACAGCAAGCGGAUGAAUUUCUAGCUUGCAACUUUCUUUACGUU .....(((......)))......(((((....((..(((((....)))))(((((((((......))).))))))..))...)))))... ( -21.60) >consensus UAACUCACAUGCUAGCCCUUCAAGUAGGCAACACAUUGUGCAAAAGUACAGCAAGCAGACAAAUUUCUAGCUUGUAACUUUCUUUAUGUU ......(((((...(((.........))).......(((((....)))))(((((((((......))).)))))).........))))). (-16.33 = -16.20 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:28 2006