Locus 5440

Sequence ID 3L_DroMel_CAF1
Location 14,905,106 – 14,905,200
Length 94
Max. P 0.652616
window8608

overview

Window 8

Location 14,905,106 – 14,905,200
Length 94
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 78.94
Mean single sequence MFE -37.34
Consensus MFE -23.60
Energy contribution -23.38
Covariance contribution -0.22
Combinations/Pair 1.31
Mean z-score -1.50
Structure conservation index 0.63
SVM decision value 0.25
SVM RNA-class probability 0.652616
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14905106 94 + 23771897
CU-GUU----------UUAGCCAUGGCUAUCGCGGCAUUGAUGCGCGGCGAAAUCUCUGGGUUUUGCCCUCCGGAGAACUGCUCUACUACGUGGCUGCCGUGGCC
..-...----------...((((((((..((((((((....)))..(((((((((....)))))))))....((((.....))))....)))))..)))))))). ( -39.10)
>DroPse_CAF1 133005 95 + 1
CUCUUU----------UCAGCCAUGGCUACCGUGGCAUCGAUGCUCGCCGGAACCUUUGGGUCUUGCCGUCCGGGGAGCUGCUCUACUACGUGGCCGCUGUGGCC
......----------...(((((((((((.((((.......((((.((((((((....))).......))))).)))).......))))))))))...))))). ( -38.35)
>DroGri_CAF1 84415 94 + 1
UU-AUU----------UUAGCCAUGGCUAUCGAGGCAUCGAUGCACGCCGCAACUUGUGGGUGCUGCCAACGGGAGAGCUCCUCUACUAUGUGGCAGCUGUGGCC
..-...----------...((((((((((((((....)))))((((.((((.....)))))))).((((...((((((...)))).))...))))))))))))). ( -40.90)
>DroMoj_CAF1 116347 103 + 1
CU-GUUUGGCUUUCGA-UAGACACGGCUACAGAGGAAUCGAUGCGCGCCGCAAUCUCUGGGUACUGCCAAGCGGAGAGCUGCUCUACUACGUAGCUGCCGUGGCC
..-....(((..((..-..))((((((..((((((......((((...)))).))))))....((((...))))..((((((........))))))))))))))) ( -32.30)
>DroAna_CAF1 74239 95 + 1
CUUUUU----------UCAGCCAUGGCUACCGCGGCAUUGAUGCCCGGCGUAAUCUCUGGGUUCUGCCCUCCGGAGAACUGCUCUACUAUGUGGCCGCUGUGGCC
......----------...((((((((..((((((((....)))).((((...((((((((........))))))))..)))).......))))..)))))))). ( -37.10)
>DroPer_CAF1 131523 95 + 1
CUACUU----------UCAGUCAUGGCUACCGUGGCAUCGAUGCUCGCCGGAACCUGUGGGUCUUGCCGUCCGGGGAGCUGCUCUACUACGUGGCCGCUGUGGCC
......----------........((((((.(((((......((((.((((((((....))).......))))).)))).((........)).))))).)))))) ( -36.31)
>consensus
CU_GUU__________UCAGCCAUGGCUACCGAGGCAUCGAUGCGCGCCGCAACCUCUGGGUCCUGCCAUCCGGAGAGCUGCUCUACUACGUGGCCGCUGUGGCC
...................((((((((..((((((((.....((.(((.(....).))).))..))))....((((.....)))).....))))..)))))))). (-23.60 = -23.38 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:24 2006