| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,899,593 – 14,899,695 |
| Length | 102 |
| Max. P | 0.609314 |
| Location | 14,899,593 – 14,899,695 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 85.42 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -21.33 |
| Energy contribution | -22.78 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14899593 102 + 23771897 CCUGGCGAAAAUAUAUACAAAUAUAUGCUUGUGUAUUCCAAGCCAUGUACUCCAUGCC------AAAACACCGAAAGUACGGAGUGCUGACGCCGAUUGCAUUACACG ..(((((...((((((....))))))(((((.(....))))))((.(((((((.(((.------............))).))))))))).)))))............. ( -25.42) >DroSec_CAF1 81547 102 + 1 CCUGGCGAAAAUAUAUACAAAUAUAUGCUUGGGUAUUCCAAGCCAUGUACUCCAUGCC------AAAACACUGAAUGUACGGAGUGCUGACGCCGAUUGCAUUACACG ..(((((...((((((....))))))((((((.....))))))((.(((((((.(((.------............))).))))))))).)))))............. ( -28.72) >DroSim_CAF1 77545 102 + 1 CCUGGCGAAAAUAUAUACAAAUAUAUGCUUGGGUAUUCCAAGCCAUGUACUCCAUGCC------AAAACACCAAAAGUACGGAGUGCUGACGCCGAUUGCAUUACACG ..(((((...((((((....))))))((((((.....))))))((.(((((((.(((.------............))).))))))))).)))))............. ( -28.92) >DroEre_CAF1 79273 108 + 1 CCUGGCGAAAAUAUAUACAAAUAUAAGCUUGGGUAUGCCAAGCCAUGUACUCCAUGCCAACACCAAAACACCAAAACUACGGAGUGCUGACGCCGAUUGCAUUACACG ..(((((...................((((((.....))))))((.(((((((...........................))))))))).)))))............. ( -25.73) >DroYak_CAF1 74304 102 + 1 CCUGGCGAAAAUAUAUACAAAUAUAUGCUUGGGUAUUCCAUGCCAUGUACUCCAUGCC------AAAACACCAAAAGUACGGAGUGCUGACGCCGAUUGCAUUACACG ..(((((...((((((....))))))((.(((.....))).))((.(((((((.(((.------............))).))))))))).)))))............. ( -24.82) >DroAna_CAF1 69352 88 + 1 CCUGGCGAAAAUAAAU----GUAUGUGCUCUGGUG-----------GUACUCCGAACG----U-GGAGCCCCCAAAGUACGGGGUGCUGACGCCGAUUGCAUUACACG ...............(----(((.((((..(((((-----------((((((((.((.----(-((.....)))..)).))))))))...)))))...)))))))).. ( -27.60) >consensus CCUGGCGAAAAUAUAUACAAAUAUAUGCUUGGGUAUUCCAAGCCAUGUACUCCAUGCC______AAAACACCAAAAGUACGGAGUGCUGACGCCGAUUGCAUUACACG ..(((((...((((((....))))))((((((.....))))))...(((((((.(((...................))).)))))))...)))))............. (-21.33 = -22.78 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:21 2006