Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,895,877 – 14,895,968 |
Length | 91 |
Max. P | 0.946233 |
Location | 14,895,877 – 14,895,968 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 77.38 |
Mean single sequence MFE | -20.64 |
Consensus MFE | -14.97 |
Energy contribution | -14.87 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -1.85 |
Structure conservation index | 0.73 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14895877 91 + 23771897 AUGU---------------AGGAUGUGUGCUUUAUAUCUUAAGGGCAC-CAGAAUAUAUUCUGAUUUAAUUAUCUUUAUUAGGUAUCCGAUUAAUGUGGUGAUAAAG ...(---------------((((((((.....)))))))))....(((-(((((....)))(((((....(((((.....)))))...)))))...)))))...... ( -16.40) >DroSec_CAF1 77860 107 + 1 AUGUAUACUGUUAUGUUGCAGGAUGUGUGCCUUAUAUCUUAAGGGCACCCAGAAUAUAUUCUGCUUUAAUUAUCUUUAUUAGGUAACUUAUUAAUGUGAUGAUGAAC .....((..((((((((((((((((((((((((........))))))).......))))))))).....((((((.....))))))......))))))))..))... ( -24.81) >DroSim_CAF1 73846 83 + 1 -----------------------UGUGUGCUUUAUAUCUUAAGGGCAC-CAGAAUAUAUUCUGUUUUUAUUAUCUUUAUUAGGUAUCUUAGUAAUGUGAUGAUGAAC -----------------------.((((.(((........))).))))-(((((....)))))..(((((((((.((((((((...))))))))...))))))))). ( -20.70) >consensus AUGU_______________AGGAUGUGUGCUUUAUAUCUUAAGGGCAC_CAGAAUAUAUUCUGAUUUAAUUAUCUUUAUUAGGUAUCUUAUUAAUGUGAUGAUGAAC ..........................(((((((........))))))).(((((....))))).....((((((..((((((........)))))).)))))).... (-14.97 = -14.87 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:20 2006