| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,893,536 – 14,893,628 |
| Length | 92 |
| Max. P | 0.836788 |
| Location | 14,893,536 – 14,893,628 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 81.75 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -16.79 |
| Energy contribution | -16.32 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.836788 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14893536 92 + 23771897 UUUGAAGUUGCGCUUAGAUUUUGC--CGGCCCCUU-UGUAUUGAAUUGGU----GGCCUCUUGCAACUUGCUUAAAGUUUAAUUGAGCGCGUAAUUUAA ....(((((((((.......((((--.((((((..-(.......)..)).----))))....))))...((((((.......))))))))))))))).. ( -26.90) >DroVir_CAF1 80560 80 + 1 UUUGAAGUUGCGCUUACAUUUCGC--------CUU-CGUAC------UGC----UGGCUUUUCCAAGUUGCUCAAAGUUUAAUUGAGCGCGUAAUUUAA ....(((((((((.........((--------(..-.....------...----.)))...........((((((.......))))))))))))))).. ( -21.20) >DroPse_CAF1 122758 94 + 1 UUUGAAGUUGCGCUUAGAUUCCGCCCCGGCCCCUUUUUUA-----UUGGGGCCCGCCCUCUUCCAACUUGCUUAAAGUUUAAUUGAGCGCGUAAUUUAA ....(((((((((.........((...((((((.......-----..)))))).)).............((((((.......))))))))))))))).. ( -29.40) >DroEre_CAF1 72050 92 + 1 UUUGAAGUUGCGCUUAGAUUUUGC--UGGGCCCUU-UGUAUUGAAUUGGU----GGCCGCUUCCAACUUGCUUAAAGUUUAAUUGAGCGCGUAAUUUAA ....(((((((((...........--..((((((.-...........)).----))))((((..(((((.....))))).....))))))))))))).. ( -23.60) >DroAna_CAF1 63091 92 + 1 UUUGAAGUUGCGUUUAGAUUUUGC--UGGCUCCUU-UGUAUUGAAUUGGU----GGCCUCUCCCAACUUGCUUAAAGUUUAAUUGAGCGCGUAAUUUAA ....(((((((((...........--.((((((..-(.......)..)).----))))...........((((((.......))))))))))))))).. ( -19.30) >DroPer_CAF1 121123 94 + 1 UUUGAAGUUGCGCUUAGAUUCCGCCCCGGCCCCUUUUUUA-----UUGGGGCCCGCCCUCUUCCAACUUGCUUAAAGUUUAAUUGAGCGCGUAAUUUAA ....(((((((((.........((...((((((.......-----..)))))).)).............((((((.......))))))))))))))).. ( -29.40) >consensus UUUGAAGUUGCGCUUAGAUUUCGC__CGGCCCCUU_UGUAU____UUGGU____GGCCUCUUCCAACUUGCUUAAAGUUUAAUUGAGCGCGUAAUUUAA ....(((((((((..................................(((.....)))...........((((((.......))))))))))))))).. (-16.79 = -16.32 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:19 2006