Locus 5434

Sequence ID	3L_DroMel_CAF1
Location	14,891,243 – 14,891,335
Length	92
Max. P	0.586773

overview

Window 0

Location	14,891,243 – 14,891,335
Length	92
Sequences	3
Columns	92
Reading direction	forward
Mean pairwise identity	99.28
Mean single sequence MFE	-26.53
Consensus MFE	-26.27
Energy contribution	-26.60
Covariance contribution	0.33
Combinations/Pair	1.00
Mean z-score	-1.39
Structure conservation index	0.99
SVM decision value	0.02
SVM RNA-class probability	0.545428
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14891243 92 + 23771897
AAUGUGUGAGUUAGUGAGUGAGUGAGUGUGACGAGUGCGCUGAGUACGUUGAGUACACUUCAUGCCCGAAUGCGCCAAAAGUGGUAACUCAG
......((((((.(((..((.(((((((((.(((((((.....)))).)))..))))).))))...))..)))((((....)))))))))). ( -23.40)
>DroSec_CAF1 73184 92 + 1
AAUGUGUGAGUUAGUGAGUGAGUGAGUGUGACGAGUGCGCUGAGUACGUUGAGUACACUUCAUGCUCGAAUGCGCCAAAAGUGGUAACUCAG
......((((((.....(((..(((((((((..((((..((.((....)).))..)))))))))))))..)))((((....)))))))))). ( -28.10)
>DroSim_CAF1 69181 92 + 1
AAUGUGUGAGUUAGUGAGUGAGUGAGUGUGACGAGUGCGCUGAGUACGUUGAGUACACUUCAUGCUCGAAUGCGCCAAAAGUGGUAACUCAG
......((((((.....(((..(((((((((..((((..((.((....)).))..)))))))))))))..)))((((....)))))))))). ( -28.10)
>consensus
AAUGUGUGAGUUAGUGAGUGAGUGAGUGUGACGAGUGCGCUGAGUACGUUGAGUACACUUCAUGCUCGAAUGCGCCAAAAGUGGUAACUCAG
......((((((.....(((..(((((((((..((((..((.((....)).))..)))))))))))))..)))((((....)))))))))). (-26.27 = -26.60 +   0.33)

alignment

secondary structure

dotplot

Window 1

Location	14,891,243 – 14,891,335
Length	92
Sequences	3
Columns	92
Reading direction	reverse
Mean pairwise identity	99.28
Mean single sequence MFE	-17.20
Consensus MFE	-17.02
Energy contribution	-16.80
Covariance contribution	-0.22
Combinations/Pair	1.05
Mean z-score	-1.44
Structure conservation index	0.99
SVM decision value	0.11
SVM RNA-class probability	0.586773
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14891243 92 - 23771897
CUGAGUUACCACUUUUGGCGCAUUCGGGCAUGAAGUGUACUCAACGUACUCAGCGCACUCGUCACACUCACUCACUCACUAACUCACACAUU
.(((((((.((....))((((.((((....))))(.((((.....)))).).)))).......................)))))))...... ( -17.40)
>DroSec_CAF1 73184 92 - 1
CUGAGUUACCACUUUUGGCGCAUUCGAGCAUGAAGUGUACUCAACGUACUCAGCGCACUCGUCACACUCACUCACUCACUAACUCACACAUU
.((((((((((....))).......(((..(((((((..((..........))..))))..)))..)))..........)))))))...... ( -17.10)
>DroSim_CAF1 69181 92 - 1
CUGAGUUACCACUUUUGGCGCAUUCGAGCAUGAAGUGUACUCAACGUACUCAGCGCACUCGUCACACUCACUCACUCACUAACUCACACAUU
.((((((((((....))).......(((..(((((((..((..........))..))))..)))..)))..........)))))))...... ( -17.10)
>consensus
CUGAGUUACCACUUUUGGCGCAUUCGAGCAUGAAGUGUACUCAACGUACUCAGCGCACUCGUCACACUCACUCACUCACUAACUCACACAUU
.((((((((((....))).......(((..(((((((..((..........))..))))..)))..)))..........)))))))...... (-17.02 = -16.80 +  -0.22)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:17 2006