| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,890,826 – 14,890,933 |
| Length | 107 |
| Max. P | 0.781364 |
| Location | 14,890,826 – 14,890,933 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 94.21 |
| Mean single sequence MFE | -30.45 |
| Consensus MFE | -26.02 |
| Energy contribution | -25.88 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14890826 107 + 23771897 AUCCAAUAUGGGCUGGGCCAUAACUCGUAUAUUGGCCCACGGCCUAAGCGUUGGCCAAUAGCUCAUGCAGCAAAUGUUUCUCUUAAGGCAAACAAAUCAGUAGUACA ......((((((((((((((............))))))..((((........))))...)))))))).......(((((.((....)).)))))............. ( -31.90) >DroSec_CAF1 72767 107 + 1 AUCCAAUAUGGGCUGGGCUAUAGCUCGUGUAUUGGCCCACGGCCUAAGCGUUGGCCAAUAGCUCAUGCAGCAAAUGUUUCUCUUAAGGCAAACAAAUCAGCAGUACA ......((((((((((((((..((....))..))))))..((((........))))...))))))))..((...(((((.((....)).))))).....))...... ( -32.10) >DroSim_CAF1 68764 107 + 1 AUCCAAUAUGGGCUGGGCUAUAACUCGUGUAUUGGCCCACGGCCUAAGCGUUGGCCAAUAGCUCAUGCAGCAAAUGUUUCUCUUAAGGCAAACAAAUCAGCAGUACA ......((((((((((((((..((....))..))))))..((((........))))...))))))))..((...(((((.((....)).))))).....))...... ( -31.80) >DroEre_CAF1 69386 107 + 1 AUCCAAUAUGGGCUUGGCCAUAACUCGUGUAUUGGCCAACGGCCUAAGCGUUGGCCAAUAGCUCAUGCAGCAAAUGUUUCUCUUAAGGCAAACAAAUCAGCAGUACA ......((((((((((((((..((....))..))))))..((((........))))...))))))))..((...(((((.((....)).))))).....))...... ( -31.10) >DroYak_CAF1 65311 107 + 1 AUCCAAUAUGGGCCUGGCUAUAACUCGUGUAUUGCCCCACGGCCUAAGCGUUGGCCAAUAGCUCAUGCAGCAAAUGUUUCUCUUAAGGCAAACAAAUCAGCUGUACA .......((((((.((((((.....(((.....(((....)))....))).))))))...))))))(((((...(((((.((....)).))))).....)))))... ( -28.70) >DroAna_CAF1 60679 107 + 1 AUUCAAUAUGGGCCCGGCCAUAACUCGUGUAUUGGCCCCCAGCCUAAGCGUCGGCCAAUAGUUCAUGCGGCAAAUGUUUCUCUUAAGGCAAACAAAUCAGCAGCACA ........((((...(((((..((....))..)))))))))((((((((((..(((............)))..))))))......)))).................. ( -27.10) >consensus AUCCAAUAUGGGCUGGGCCAUAACUCGUGUAUUGGCCCACGGCCUAAGCGUUGGCCAAUAGCUCAUGCAGCAAAUGUUUCUCUUAAGGCAAACAAAUCAGCAGUACA .......((((((.((((((..((....))..))))))..((((........))))....))))))((.((...(((((.((....)).))))).....)).))... (-26.02 = -25.88 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:15 2006