Locus 5430

Sequence ID 3L_DroMel_CAF1
Location 14,884,746 – 14,884,838
Length 92
Max. P 0.620585
window8594

overview

Window 4

Location 14,884,746 – 14,884,838
Length 92
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 75.90
Mean single sequence MFE -32.51
Consensus MFE -15.33
Energy contribution -16.52
Covariance contribution 1.20
Combinations/Pair 1.10
Mean z-score -1.89
Structure conservation index 0.47
SVM decision value 0.18
SVM RNA-class probability 0.620585
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14884746 92 - 23771897
AGGCUGCGUGGGUGGGC------GG---GUUCUCAAUGCAGGGUGUGGUCCU---------CUCACACUCACUUGCAUAUCACAUGUGUCCUUAGCAUAGCCAGUGACAU
.(((((.((....((((------(.---((.....(((((((((((((....---------.))))))))...))))).....)).)))))...)).)))))........ ( -31.50)
>DroPse_CAF1 114714 97 - 1
AGGCUGUGGGGGAGAU-------------AUGUACAUGCGGAGAGAGGAGGUGGAGGAGAAGCCCCAGACACAUGCAUAUCACAUAUGUCUUUAGCAUAGCCAGUGACAU
.((((((((((((.((-------------((((..(((((......((.(((.........))))).......)))))...)))))).)))))..)))))))........ ( -30.02)
>DroSec_CAF1 66856 92 - 1
AGGCUGUGUGGGUGGGC------UG---GUUCUCAAUGCAGGGUGUGGUCCU---------CUCACAAUCACAUGCAUAUCACAUGUGUCCUUAGCAUAGCCAGUGACAU
.(((((((((((.((((------((---...(((......)))..)))))).---------))).....((((((.......))))))......))))))))........ ( -31.20)
>DroSim_CAF1 62348 92 - 1
AGGCUGCGUGGGUGGGC------GG---GUUCUCAAUGCAGGGUGUGGUCCU---------CUCACACUCACAUGCAUAUCACAUGUGUCCUUAGCAUAGCCAGUGACAU
.(((((.((....((((------(.---((.....(((((((((((((....---------.))))))))...))))).....)).)))))...)).)))))........ ( -31.50)
>DroYak_CAF1 58858 100 - 1
AGGCUGUGUGGGUGGGUGGGGUUGGCUUAUU-UCAAUGCAGGGUUUGGUCCU---------CCCACACCCACAUGCAUAUCACAUGUGUCCUUAGCAUAGCCAGUGACAU
.((((((((((((((((((((..((((...(-((......)))...))))..---------))).)))))))..((((((...))))))))...))))))))........ ( -40.80)
>DroPer_CAF1 113015 97 - 1
AGGCUGUGGGGGAGAU-------------AUGUACAUGCGGAGAGAGGAGGUGGAGGAGAAGCCCCAGACACAUGCAUAUCACAUAUGUCUUUAGCAUAGCCAGUGACAU
.((((((((((((.((-------------((((..(((((......((.(((.........))))).......)))))...)))))).)))))..)))))))........ ( -30.02)
>consensus
AGGCUGUGUGGGUGGGC______GG___GUUCUCAAUGCAGGGUGUGGUCCU_________CCCACACUCACAUGCAUAUCACAUGUGUCCUUAGCAUAGCCAGUGACAU
.(((((((((((................................((((..............))))...((((((.......)))))).)))..))))))))........ (-15.33 = -16.52 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:10 2006