| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,872,313 – 14,872,425 |
| Length | 112 |
| Max. P | 0.506662 |
| Location | 14,872,313 – 14,872,425 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 83.95 |
| Mean single sequence MFE | -21.20 |
| Consensus MFE | -14.11 |
| Energy contribution | -14.67 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14872313 112 + 23771897 AUUUGAAUGCGAUUGGUAAAGAAACUUUAACCGUUAAGCCGAAAAAAUUGUGUCAAAAUCAUAGAGUUAUUUUGGCCGUAAAGUACAAAGGUUUAGUAAGUUAGCCAAAAAU ............(((((......(((..((((.....(((((((.((((.(((.......))).)))).))))))).(((...)))...)))).)))......))))).... ( -20.30) >DroSec_CAF1 54540 100 + 1 AUUUAAAUGCGAUUGGUAAAGAAGCUUUAACCAUUAAGCCAAACAAAUUGUGUCAAAAUCAUAUAGUUACUUUGGCCGUAAUGGACAAAAG------------GCUAUAAAU .......(((.....)))....((((((..((((((.((((((..((((((((.......))))))))..))))))..))))))....)))------------)))...... ( -21.70) >DroSim_CAF1 49804 100 + 1 AUUUAAAUGCUAUUGGUAAUGAAGCUUUAACCAUUAAGCCGAACAAAUUGUGUCAAAAUCAUAUAGUUACUUUGGCCGUAAUGGACAAAAG------------GCUAUAAAU .......(((.....)))....((((((..((((((.((((((..((((((((.......))))))))..))))))..))))))....)))------------)))...... ( -21.60) >consensus AUUUAAAUGCGAUUGGUAAAGAAGCUUUAACCAUUAAGCCGAACAAAUUGUGUCAAAAUCAUAUAGUUACUUUGGCCGUAAUGGACAAAAG____________GCUAUAAAU ........((....(((......)))....((((((.((((((..((((((((.......))))))))..))))))..))))))...................))....... (-14.11 = -14.67 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:06 2006