| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,872,076 – 14,872,196 |
| Length | 120 |
| Max. P | 0.897555 |
| Location | 14,872,076 – 14,872,196 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.11 |
| Mean single sequence MFE | -23.59 |
| Consensus MFE | -19.39 |
| Energy contribution | -20.27 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.897555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14872076 120 + 23771897 AACUUUUGAAAAAAUCACCGACAUAAAAUGAUUGAACUGAGAGUUUGCGGUUUUCACCAAAAAAUAUGGUCAAUAAAAACCCAAGGCCAAAAUAAACCGCAAUUCGCGGUUUUGUUCAAU ............................(((..((((((.(((((.(((((((.............(((((.............)))))....)))))))))))).))))))...))).. ( -24.85) >DroSec_CAF1 54302 119 + 1 AACUUCUGAAAAACUCACCGACAUAAAAUGAUUGAACUGAGAGUUUGCGGUUUUCACCAAAAAAUACGGUCAAUAAAAAC-CAAGGCCAAAAUAAACCGCAAUUCGCGGUUUCGUUCAAU ............................(((.(((((((.(((((.(((((((..............((((.........-...)))).....)))))))))))).))).)))).))).. ( -22.71) >DroSim_CAF1 49567 119 + 1 AACUUUUGAAAAACUCACCGACAUAAAAUGAUUGAACUGAGAGUUUGCGGUUUUCACCAAAAAAUACGGUCAAUAAAAAC-CAAGGCCAAAAUAAACCGCAAUUCGCGGUUUCGUUCUAU ......................(((.(((((...(((((.(((((.(((((((..............((((.........-...)))).....)))))))))))).)))))))))).))) ( -21.71) >DroEre_CAF1 50874 117 + 1 AACUUUGGAAAAAA-CC-UGACAAAAAAUGAUUCAACUGAGAGCUUGCGGUUUUCGCCAAAAAAUACAGUCAAUAAAAAC-CAGCGCCAACAUAAACCGCAAUUCGCGGUUUUGUUCAAU ...(((((..((((-((-.............(((....))).(....)))))))..)))))...................-.......((((.(((((((.....))))))))))).... ( -22.10) >DroYak_CAF1 46067 118 + 1 AACUUUGGGAAAAG-CAGCGACAAAAAAUGAUUAAACUGAGAGUUUGCGGUUUUCUCCAAAAAAUAAGGUCCAUAAAAAG-CAAGGCCAACAUUAACCGCAAUUCGCGGUUUUGUUCAAU ...(((((..((((-(.((..((.....))...((((.....)))))).)))))..)))))......((((.........-...))))((((..((((((.....)))))).)))).... ( -26.60) >consensus AACUUUUGAAAAAAUCACCGACAUAAAAUGAUUGAACUGAGAGUUUGCGGUUUUCACCAAAAAAUACGGUCAAUAAAAAC_CAAGGCCAAAAUAAACCGCAAUUCGCGGUUUUGUUCAAU ............................(((..((((((.(((.(((((((((..............((((.............)))).....)))))))))))).))))))...))).. (-19.39 = -20.27 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:05 2006