| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,869,083 – 14,869,186 |
| Length | 103 |
| Max. P | 0.939516 |
| Location | 14,869,083 – 14,869,186 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 77.29 |
| Mean single sequence MFE | -22.47 |
| Consensus MFE | -19.50 |
| Energy contribution | -19.42 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.939516 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14869083 103 + 23771897 ACUUAAAUUA---AAUCCUUAAU--CAAAUUUCUAAUCAAACAUUUUCCACUUUAGCCAGGCCAGCAACGUAGUUCUUUGCUGGGCAACCAGCGACUGCGUGCUCGAA ..........---..........--....................................(.((((.(((((((....(((((....)))))))))))))))).).. ( -23.80) >DroSec_CAF1 51388 98 + 1 ACUUUA-CU-------GCUUAAU--CAAAUUUCUAAUCAAAUAUUUUCCAUUUUAGCCAGGCCAGCAACGUGGUUCUUUGCUGGGCAACCAGCGACUGCGUGCUCGAA ......-((-------(.((((.--...........................)))).))).(.((((.((..(((....(((((....))))))))..)))))).).. ( -23.79) >DroSim_CAF1 46585 102 + 1 ACUUUA-CUA---AGUACUUAAU--CAAAUUUCUAAUCAAACAUUUUCCAUUUUAGCCAGGCCAGCAACGUGGUUCUUUGCUGGGCAACCAGCGACUGCGUGCUCGAA ((((..-..)---))).......--....................................(.((((.((..(((....(((((....))))))))..)))))).).. ( -23.20) >DroEre_CAF1 47628 106 + 1 AUUUAAAUAAGCAUUUGCUUAAG--CAAAUUUCUAAUCAAAUAAUUUCCAUUUCAGCCAGGCCAGCAACGUGGUUCUUGGCUGGGCAACCAGCGACUGCGUGCUCCAA .......(((((....)))))..--..................................((..((((.((..(((....(((((....))))))))..)))))))).. ( -28.80) >DroYak_CAF1 42795 107 + 1 A-UUGAACAAUAAUUUGUUAUAUUUAAAAUUUCUAAUCAAAUAUUUUCCAUUUCAGCCAGGCCAGCAACGUGGUUCUUUGCUGGGCAACCAGCGACUGCGUGCUCGAA .-...(((((....)))))..........................................(.((((.((..(((....(((((....))))))))..)))))).).. ( -24.80) >DroAna_CAF1 39716 97 + 1 UAUAAAAACU---AAU-AUUAAU--UCACUUUCUU-----AUAUUUUUCAUUUCAGCUAAGCCGGCAACCUAGUUCUCCGUCGGACCAGCAGCAACUACAGGCCACAA ..........---...-......--..........-----...............(((...(((((.............)))))...))).((........))..... ( -10.42) >consensus ACUUAAACUA___AAUGCUUAAU__CAAAUUUCUAAUCAAAUAUUUUCCAUUUCAGCCAGGCCAGCAACGUGGUUCUUUGCUGGGCAACCAGCGACUGCGUGCUCGAA ...............................................................((((.(((((((....(((((....)))))))))))))))).... (-19.50 = -19.42 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:04 2006