Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,864,727 – 14,864,823 |
Length | 96 |
Max. P | 0.980426 |
Location | 14,864,727 – 14,864,823 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 93.44 |
Mean single sequence MFE | -30.72 |
Consensus MFE | -28.58 |
Energy contribution | -27.90 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.25 |
Mean z-score | -1.58 |
Structure conservation index | 0.93 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14864727 96 - 23771897 CAUCUUGCCCUCGUUUUGGAUUAGAUUCCAGCAUCACUGGGUAAAAAGGUACCUGCCAUAAUGAGCUCUUUCAAUGCCCCAGAGAGCGGGUGGGAC ..(((..(((......((((......))))((.((.(((((......(((....)))....((((....))))....))))).)))))))..))). ( -31.80) >DroSec_CAF1 46812 96 - 1 CAUCUUGCCCUCGUUUUGGAUUAGAUUCCAGCAUCACUGGGUGAAAAGGUACCUGCCAUAAUGAGCUCUUUCAAUGGCCCAGAGAGCGGGUGAGUC ...((..(((......((((......))))((.((.((((((.(...(((....)))....((((....)))).).)))))).)))))))..)).. ( -32.40) >DroSim_CAF1 42021 96 - 1 CAUCUUGCCCUCGUUUUGGAUUAGAUUCCAGCAUCACUAGGUGAAAAGGUACCUGCCAUAAUGAGCUCUUUCAAUGCCCCAGAGAGCGGGUGGGCC ...((..((((((((.(((....(((......)))..((((((......))))))))).)))))(((((((.........))))))))))..)).. ( -29.30) >DroEre_CAF1 42993 96 - 1 CAUCUUGCCCUCGUUUUGGAUUAGAUUCCAGCAUCACUGGGCAAAAAGGUACCCGCCAUAAUGAGCUCUUUCAAUGCCCCGAAGAGCGGGUGGCUC ....((((((..((.(((((......))))).))....))))))..((.(((((..(.....).(((((((.........)))))))))))).)). ( -29.80) >DroYak_CAF1 38420 94 - 1 CAUCUUGCCCUCGUUUUGGAUUAGAUCCCAGCAUCACUGGGUAAAAAGGUACCCGCCAUAAUGAGCUCUUUCAAUGCCCCAGAGGGCGGGUGGC-- (((((.((((((((.(((((..((..(((((.....)))))......(((....)))........))..))))).))....)))))))))))..-- ( -30.30) >consensus CAUCUUGCCCUCGUUUUGGAUUAGAUUCCAGCAUCACUGGGUAAAAAGGUACCUGCCAUAAUGAGCUCUUUCAAUGCCCCAGAGAGCGGGUGGGUC ...((..((((((((.(((....(((......)))...(((((......))))).))).)))))(((((((.........))))))))))..)).. (-28.58 = -27.90 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:03 2006