Locus 5422

Sequence ID 3L_DroMel_CAF1
Location 14,857,293 – 14,857,396
Length 103
Max. P 0.696210
window8583

overview

Window 3

Location 14,857,293 – 14,857,396
Length 103
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.27
Mean single sequence MFE -29.13
Consensus MFE -20.89
Energy contribution -21.59
Covariance contribution 0.70
Combinations/Pair 1.21
Mean z-score -1.56
Structure conservation index 0.72
SVM decision value 0.34
SVM RNA-class probability 0.696210
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14857293 103 + 23771897
AGCCUCUAUUAGGCUGCUAAUUGAAAUACCAGUACGAGGACUGGGGCGU--CCAGA----CCAGUCCAAAGGUUAAAUCAUGUCAAAGAGCUCGAGUUUCGAUUGGAAA
(((((.....))))).(((((((((((.(.(((.(..(((((((..(..--...).----)))))))...(((...)))........).))).).)))))))))))... ( -30.90)
>DroSec_CAF1 33867 103 + 1
AGCCUCUAUUAGGCUGCUAAUUGAAAUACCAGUACGAGGACUGGGGCGU--CCAGA----CCGGUCCAAAGGUUAAAUCAUGUCAAAGAGCUCGAGUUUCGAUUGGAAA
(((((.....))))).(((((((((((.(.(((.(..(((((((..(..--...).----)))))))...(((...)))........).))).).)))))))))))... ( -30.20)
>DroSim_CAF1 34523 103 + 1
AGCCUCUAUUAGGCUGCUAAUUGAAAUACCAGUACGAGGACUGGGGCGU--CCAGA----CCGGUCCAAAGGUUAAAUCAUGUCAAAGAGCUCGAGUUUCGAUUGGAAA
(((((.....))))).(((((((((((.(.(((.(..(((((((..(..--...).----)))))))...(((...)))........).))).).)))))))))))... ( -30.20)
>DroEre_CAF1 36045 103 + 1
AGCCUCUAUUAGGCUGCUAAUUGAAAUACCAGCACGAGGACUGGAGCAA--CCGGA----GCACUCCAACGGUUAAAUCAUGCCAAAGAGCUCGAGUUUCGAUUGGGAA
(((((.....))))).(((((((((...((.......))(((.((((..--..(((----....)))...(((........))).....)))).))))))))))))... ( -31.30)
>DroYak_CAF1 30647 105 + 1
AGCCUCUAUUAGGCUGCUAAUUGAAAUACAAGUACGAGGACUGGAGCCAGUCCACA----CCAGUCCGGAGGUUAAAUCAUGUCAAAGAGCUCGAGUUUCGAUUGGGAA
(((((.....))))).(((((((((((.(.(((.(..(((((((.(........).----))))))).((.((......)).))...).))).).)))))))))))... ( -32.00)
>DroAna_CAF1 27614 100 + 1
UGCCUCUAUUAGCCUGCUAAUUGAAAUACCAGCACCG--AAU-----GU--CGAAAACUUCCACUUUUAUUGUGAACUGUUGCUGGUCAGCUUGAAUUUUGGUCUGAAA
....((.(((((....))))).)).....(((.((((--((.-----.(--(((.(((...(((.......)))....)))(((....)))))))..)))))))))... ( -20.20)
>consensus
AGCCUCUAUUAGGCUGCUAAUUGAAAUACCAGUACGAGGACUGGGGCGU__CCAGA____CCAGUCCAAAGGUUAAAUCAUGUCAAAGAGCUCGAGUUUCGAUUGGAAA
(((((.....))))).(((((((((((.(.(((....(((((((................)))))))..........((........))))).).)))))))))))... (-20.89 = -21.59 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:00 2006