Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,853,916 – 14,854,066 |
Length | 150 |
Max. P | 0.864861 |
Location | 14,853,916 – 14,854,028 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 74.46 |
Mean single sequence MFE | -22.95 |
Consensus MFE | -10.57 |
Energy contribution | -11.53 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.33 |
Mean z-score | -1.98 |
Structure conservation index | 0.46 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14853916 112 + 23771897 UUUGACUUUAAGCUUAGCAUAUAGACUGUCAUCUAAAAUAUCGAUGUUUGUUAGGCUUUGUUUAUGCAGUCAUUAAAAUAUCAUUAAUUUCAUAAAUAUUGUGCUGCAAAAG ...(((...((((((((((..........((((.........))))..)))))))))).)))..(((((.(((...(((((..............))))))))))))).... ( -19.44) >DroSec_CAF1 30504 97 + 1 UUUGACUUUUAGCUAAGCACAUAGACUGUCAUCUAAAAUAAUGAUGUUUGU---------------CAGUCAUUAAAAUAUCAUUCAUUUGAUAAAUAUUGUGCUGCAAAAG .....(((((.((..((((((..(((((.((((.........)))).....---------------))))).......(((((......))))).....))))))))))))) ( -23.80) >DroSim_CAF1 31101 112 + 1 UUUGACUUUUAGCUAAGCACAUGGACUGUCAUCUAAAAUAAUGAUGUUUGUUUGGCUUUCUUUAUGCAGUCAUUAAAAUAUCAUUUAUUUGAUAAAUAUUGUGCUGCAAAAG .....(((((.((..((((((.....(((((..(((....(((((((((...(((((..........)))))...))))))))))))..))))).....))))))))))))) ( -26.60) >DroEre_CAF1 32619 91 + 1 --UGACUUUUAGCUAAGCAUAUAGACCGACUUCUAAAAUAAUCAUGUUUGCCUGACU--------GCAAGCUG-CAAGUCU-------CUUAAGAAUUUUGUUUUUCAA--- --.(((((.(((((..(((..((((......))))......(((.(....).))).)--------)).)))))-.))))).-------.....(((........)))..--- ( -15.80) >DroYak_CAF1 27103 112 + 1 UUUGACUUUGAGCUAAGCAUAUAGACUGACAUCUGAAAUAAUGAUGUUUGCUUGGUUUGGUUUAUGCAGUCAUUAAAAUGUCAUGCAAUUGAUAAAUGUUGUGCUGCAAAUG .......(..(((((((((........((((((.........)))))))))))))))..)....(((((.(((.....(((((......)))))......)))))))).... ( -29.10) >consensus UUUGACUUUUAGCUAAGCAUAUAGACUGUCAUCUAAAAUAAUGAUGUUUGUUUGGCUU__UUUAUGCAGUCAUUAAAAUAUCAUUCAUUUGAUAAAUAUUGUGCUGCAAAAG ..........((((((((...((((......))))(((((....)))))))))))))........(((((........(((((......)))))........)))))..... (-10.57 = -11.53 + 0.96)
Location | 14,853,916 – 14,854,028 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 74.46 |
Mean single sequence MFE | -17.98 |
Consensus MFE | -3.28 |
Energy contribution | -4.16 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.14 |
Mean z-score | -1.55 |
Structure conservation index | 0.18 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14853916 112 - 23771897 CUUUUGCAGCACAAUAUUUAUGAAAUUAAUGAUAUUUUAAUGACUGCAUAAACAAAGCCUAACAAACAUCGAUAUUUUAGAUGACAGUCUAUAUGCUAAGCUUAAAGUCAAA ((((.((((((.........((((((.......))))))..(((((..........(.....)...((((.........)))).)))))....))))..))..))))..... ( -13.30) >DroSec_CAF1 30504 97 - 1 CUUUUGCAGCACAAUAUUUAUCAAAUGAAUGAUAUUUUAAUGACUG---------------ACAAACAUCAUUAUUUUAGAUGACAGUCUAUGUGCUUAGCUAAAAGUCAAA (((((((((((((.....(((((......))))).......(((((---------------.......(((((......))))))))))..))))))..)).)))))..... ( -20.71) >DroSim_CAF1 31101 112 - 1 CUUUUGCAGCACAAUAUUUAUCAAAUAAAUGAUAUUUUAAUGACUGCAUAAAGAAAGCCAAACAAACAUCAUUAUUUUAGAUGACAGUCCAUGUGCUUAGCUAAAAGUCAAA (((((((((((((.....(((((......))))).......((((((((...((((..................))))..))).)))))..))))))..)).)))))..... ( -20.67) >DroEre_CAF1 32619 91 - 1 ---UUGAAAAACAAAAUUCUUAAG-------AGACUUG-CAGCUUGC--------AGUCAGGCAAACAUGAUUAUUUUAGAAGUCGGUCUAUAUGCUUAGCUAAAAGUCA-- ---.....................-------.(((((.-.((((.((--------(...((((..((.(((.....)))...))..))))...)))..))))..))))).-- ( -19.80) >DroYak_CAF1 27103 112 - 1 CAUUUGCAGCACAACAUUUAUCAAUUGCAUGACAUUUUAAUGACUGCAUAAACCAAACCAAGCAAACAUCAUUAUUUCAGAUGUCAGUCUAUAUGCUUAGCUCAAAGUCAAA ..((((.(((...................((((((((((((((.(((..............)))....))))))....))))))))((......))...)))))))...... ( -15.44) >consensus CUUUUGCAGCACAAUAUUUAUCAAAUGAAUGAUAUUUUAAUGACUGCAUAAA__AAGCCAAACAAACAUCAUUAUUUUAGAUGACAGUCUAUAUGCUUAGCUAAAAGUCAAA ........................................(((((.....................((((.........))))..((.(((......)))))...))))).. ( -3.28 = -4.16 + 0.88)
Location | 14,853,956 – 14,854,066 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 79.79 |
Mean single sequence MFE | -21.23 |
Consensus MFE | -13.68 |
Energy contribution | -15.49 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.12 |
Mean z-score | -1.74 |
Structure conservation index | 0.64 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14853956 110 + 23771897 UCGAUGUUUGUUAGGCUUUGUUUAUGCAGUCAUUAAAAUAUCAUUAAUUUCAUAAAUAUUGUGCUGCAAAAGU--UAAGCCUCUUAAGCAUUCUGUUUUUCAAUUUAUAUGA ..((((((((..((((((..(((.(((((.(((...(((((..............))))))))))))).))).--.))))))..)))))))).................... ( -24.64) >DroSec_CAF1 30544 95 + 1 AUGAUGUUUGU---------------CAGUCAUUAAAAUAUCAUUCAUUUGAUAAAUAUUGUGCUGCAAAAGUC-UAAGCCUCUUAAGCAUUCUGUU-UUCAACAUAUAUGA (((((((((..---------------.........)))))))))((((((((.(((((..(((((......((.-...))......)))))..))))-))))).....)))) ( -14.50) >DroSim_CAF1 31141 111 + 1 AUGAUGUUUGUUUGGCUUUCUUUAUGCAGUCAUUAAAAUAUCAUUUAUUUGAUAAAUAUUGUGCUGCAAAAGUCCUAAGCCUCUUAAGCAUUCUGUU-UUCAACAUAUAUGA ..((((((((...(((((.((((.(((((.(((.....(((((......)))))......))))))))))))....)))))...)))))))).....-.............. ( -27.70) >DroYak_CAF1 27143 104 + 1 AUGAUGUUUGCUUGGUUUGGUUUAUGCAGUCAUUAAAAUGUCAUGCAAUUGAUAAAUGUUGUGCUGCAAAUGUAUUAAGUCUCUUAAGAAUUUUG--------UAUAUAUGA ...((((.(((..(((((......(((((.(((.....(((((......)))))......))))))))......(((((...))))))))))..)--------)).)))).. ( -18.10) >consensus AUGAUGUUUGUUUGGCUUUGUUUAUGCAGUCAUUAAAAUAUCAUUCAUUUGAUAAAUAUUGUGCUGCAAAAGUC_UAAGCCUCUUAAGCAUUCUGUU_UUCAACAUAUAUGA ..((((((((...(((((......(((((.(((.....(((((......)))))......))))))))........)))))...)))))))).................... (-13.68 = -15.49 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:56 2006