| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,850,084 – 14,850,194 |
| Length | 110 |
| Max. P | 0.649757 |
| Location | 14,850,084 – 14,850,194 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.60 |
| Mean single sequence MFE | -15.03 |
| Consensus MFE | -10.14 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14850084 110 + 23771897 ACAAAAAAAAA--AAAUAAUAAUAGAGGCCAUAGUCCAAGCAAAAACUCAUAAGUGGCAGCGGUUUAAGCAUUGGCCACAAAAAACUUAUACACAUAUAAAUUUCAUAUUAA ...........--......((((((((((((........((....(((....))).)).((.......))..))))).........(((((....)))))...)).))))). ( -15.00) >DroSec_CAF1 26553 106 + 1 ----AAAAAAA--UAAUAAUAAUAGAGGUCAUAGUCCAAGCAAAAACUCAUAAGUGGCAGCGGUUUAAGCAUUGGCCACAAAAAACUUAUACACAUAUAAAUUUCAUAUUAA ----.......--......((((((((((........................(((((.((.......))....))))).......(((((....)))))))))).))))). ( -13.60) >DroEre_CAF1 28692 101 + 1 ----AAAAAAA-------ACAAUAGAGCCCAUAGUCCAAGCAAAAACUAAUAAGUGGCAGCGGUUUAAGCAUUGGCCACAAAAAACUUGUUCACAUAUAAAUUUCAUAUUAA ----.......-------......((((...((((..........))))....(((((.((.......))....))))).........)))).................... ( -13.90) >DroYak_CAF1 22993 106 + 1 ----AAAAAAAAAAAAAUACAAUAGAGGCCAUAGUCCAAGCAAAAACUCAUAAGUGGUAGCGGUUCAAGCAUUGGCCACAAAAAAAC--UCCACAUAUAAAUUUCAUAUUAA ----......................(((((..((....((.(..(((....)))..).)).......))..)))))..........--....................... ( -11.60) >DroAna_CAF1 20642 102 + 1 -C--AAAAAAA-------AAAAUAGAGGCCAUAGUCGUAGCAAAAACUCAUAAGUGGCAGCGGUUUAAGCAGCAGCCACAAAAAACUUAUGCACAUAUAAAUCUCAAAUUAA -.--.......-------......((((..(((...((.(((...........(((((.((.((....)).)).)))))..........))))).)))...))))....... ( -16.20) >DroPer_CAF1 79028 88 + 1 ----AAAAACA--------------AGGCCA------GAGCAAAAACUCAUAAGUGGCGGCGGUUUAAGCAGCGGCCACAAAAAGUUUAUAUCAAUAUAAAUUUCAUAUUAA ----.......--------------......------(((......)))....(((((.((.((....)).)).)))))...(((((((((....)))))))))........ ( -19.90) >consensus ____AAAAAAA_______ACAAUAGAGGCCAUAGUCCAAGCAAAAACUCAUAAGUGGCAGCGGUUUAAGCAUUGGCCACAAAAAACUUAUACACAUAUAAAUUUCAUAUUAA ..........................((((.........((....(((....))).)).((.......))...))))................................... (-10.14 = -10.20 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:53 2006