Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,842,817 – 14,842,922 |
Length | 105 |
Max. P | 0.823297 |
Location | 14,842,817 – 14,842,922 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.52 |
Mean single sequence MFE | -46.29 |
Consensus MFE | -23.87 |
Energy contribution | -24.29 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.30 |
Mean z-score | -1.92 |
Structure conservation index | 0.52 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14842817 105 + 23771897 --------GC-------AGCCUGGGGAGCCCCCUCACCACCCCACUCGCUGACGGUGGUGGCCCACAGCGCCACCUGGAUGCAGCUCACCUGGCAGCCGCCAGAGUACGCCCAUCCGCAU --------.(-------(((.(((((.............)))))...))))..(((((((........))))))).(((((..((..(((((((....))))).))..)).))))).... ( -42.12) >DroVir_CAF1 40085 113 + 1 A-------UCAGAACGGAACCUGGGGCGCGCCAUCGCCGCCUCACUCUCUGACCGUGCUAACACAUAGCGCGACCUGGAUGCAGCUGACCUGGCAGCCGUCAGAGUAUUCGCAUCCGCAC .-------......((((...(((((((.((....)))))))))...))))..(((((((.....)))))))....((((((.....(((((((....))))).))....)))))).... ( -43.60) >DroPse_CAF1 75268 113 + 1 GGGAGGGCAC-------CACCUGGGGCUCACCCUCGCCACCACACUCGCUGACUGUGGUGGCGCACAGUGCCACAUGGAUGCAGCUGAUCUGGCAGCCGCCAGAGUACGCCCAUCCCCAU ((((((((.(-------((..(((.(((......((((((((((.((...)).))))))))))...))).)))..)))..........((((((....))))))....)))).))))... ( -54.60) >DroWil_CAF1 175724 112 + 1 --------GCAAAAUGGUACCUGGGCUGCCCCCUCACCACCGCACUCCCUUACUGUGGCGGGUCACAGCGCCACAUGGAUGCAAUUGACUUGGCAGCCGCCGGAAUAUGCGCAUCCACAC --------(((...((((.....(((((((...(((.....(((.(((.....(((((((........))))))).))))))...)))...))))))))))).....))).......... ( -36.80) >DroAna_CAF1 14070 113 + 1 GUGAAGGCGU-------CGCCUGGGGCGCCCCCUCGCCACCACACUCGCUGACGGUGGUGGCGCACAGUGCCACCUGGAUGCAGUUAACGUGGCAGCCACCAGAGUACGCCCAUCCGCAC (((..(((((-------.(((((((((.......(((((((((.(........)))))))))).....(((((((((....))).....))))))))).)))).)))))))....))).. ( -50.50) >DroPer_CAF1 72732 113 + 1 GCGAGGGCAC-------CACCUGGGGCUCACCCUCGCCACCACACUCGCUGACUGUGGUGGCGCACAGUGCCACAUGGAUGCAGCUGAUCUGGCAGCCGCCAGAGUACGCCCAUCCCCAU .....(((((-------.....(((.....))).((((((((((.((...)).))))))))))....)))))....(((((..((...((((((....))))))....)).))))).... ( -50.10) >consensus G_______GC_______CACCUGGGGCGCCCCCUCGCCACCACACUCGCUGACUGUGGUGGCGCACAGCGCCACAUGGAUGCAGCUGACCUGGCAGCCGCCAGAGUACGCCCAUCCGCAC ......................((((((......)))).))............(((((((........))))))).(((((........(((((....)))))........))))).... (-23.87 = -24.29 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:52 2006