Locus 5413

Sequence ID	3L_DroMel_CAF1
Location	14,832,502 – 14,832,593
Length	91
Max. P	0.772152

overview

Window 7

Location	14,832,502 – 14,832,593
Length	91
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	95.67
Mean single sequence MFE	-12.00
Consensus MFE	-11.82
Energy contribution	-11.82
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.14
Structure conservation index	0.98
SVM decision value	0.53
SVM RNA-class probability	0.772152
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14832502 91 + 23771897
UCCAAUUUU--UUUCUUUUCCACAACUCCGCACCCUUAUCCUUAUCCAGCGCCCAAACACAAUGCUACUUGCUAAUGACUCCGUAGGAUGAGU
.........--.............................(((((((.(((......((....((.....))...))....))).))))))). ( -11.60)
>DroSec_CAF1 9180 93 + 1
UCCAAUUUUUUUUUCUUUUCCACAAUUCCGCACCCUUAUCCUUAUCCAGCGCCCAAACACAAUGCUACUUGCUAAUGACUCCGUAGGAUGAGU
........................................(((((((.(((......((....((.....))...))....))).))))))). ( -11.60)
>DroSim_CAF1 9393 93 + 1
UCCAAUUUUUUUUUCUUUUCCACAAUUCCGCACCCUUAUCCUUAUCCAGCGCCCAAACACAAUGCUACUUGCUAAUGACUCCGUAGGAUGAGU
........................................(((((((.(((......((....((.....))...))....))).))))))). ( -11.60)
>DroEre_CAF1 10891 90 + 1
ACCAAUUU---UUCCUUUUCCACAAUUCCGCACCCUUAUCCUUAUCCAGCGCCCAAGCACAAUGCUACUUGCUAAUGACUCCGUAGGAUGAGU
........---.............................(((((((((((....(((.....)))...)))).(((....))).))))))). ( -13.60)
>DroYak_CAF1 5131 91 + 1
ACCAAUUUU--UUCCUUUUACACAAUUCCGCACCCUUAUCCUUAUCCAGCGCCCAAACACAAUGCUACUUGCUAAUGACUCCGUAGGAUGAGU
.........--.............................(((((((.(((......((....((.....))...))....))).))))))). ( -11.60)
>consensus
UCCAAUUUU__UUUCUUUUCCACAAUUCCGCACCCUUAUCCUUAUCCAGCGCCCAAACACAAUGCUACUUGCUAAUGACUCCGUAGGAUGAGU
........................................(((((((.(((......((....((.....))...))....))).))))))). (-11.82 = -11.82 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:45 2006