| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,832,036 – 14,832,133 |
| Length | 97 |
| Max. P | 0.900712 |
| Location | 14,832,036 – 14,832,133 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 71.61 |
| Mean single sequence MFE | -21.49 |
| Consensus MFE | -13.89 |
| Energy contribution | -13.92 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.900712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14832036 97 + 23771897 CCAUCAGCUUGCUUUCCACUAUGUGCUGGCAAGCUGACGUCACUUGACUUUAGUUUAUUCAAGUAAGUAGAUC--AUUUUUUAUAACUACAUUUUUGAA ...((((((((((...(((...)))..)))))))))).(((....))).........((((((...((((...--...........))))...)))))) ( -24.04) >DroPse_CAF1 64385 98 + 1 CCCUCCGCCUGCUUUCCACUGUGUGCUGGCAAGCUGACGUCCCUGGACUUUAGUUUGUUCAAGUAAGUCCACACCAAUAUUUGUAA-UCCAUCUCUGCA ...................((((..((((((((((((.(((....))).))))))))))......))..)))).............-............ ( -19.40) >DroGri_CAF1 29766 87 + 1 CCCUCGGCUUGUUUCCCCAUCUGUGCGGGGAAGCUGACCUCCCUGGACUUCAGUUUGUUUAAGUAAGUAUGGA--A----------UGAGAGGUGUAAA .((((((...((((((((........))))))))...))..((...((((.(.((.....)).)))))..)).--.----------...))))...... ( -24.40) >DroSec_CAF1 8754 97 + 1 CCAUCGGCUUGCUUUCCACUAUGUGCUGGCAAGCUGACGUCCCUCGACUUUAGUUUAUUUAAGUAAGUAGAUU--AUUUUAAAUAACUACAUUUUUGAA ...((((((((((...(((...)))..)))))))))).(((....)))..(((((.((((((((((.....))--).)))))))))))).......... ( -23.10) >DroEre_CAF1 10529 76 + 1 CCAUCCGCUUGCUUUCCCCUGUGUUCCGGCAAGCUGACGUCACUCGACUUCAGUUUAUUCAAGUGAGUAGGCA--AUU--------------------- ......((((((((.(.((........)).(((((((.(((....))).)))))))......).)))))))).--...--------------------- ( -20.60) >DroPer_CAF1 61105 98 + 1 CCCUCCGCCUGUUUUCCACUGUGUGCUGUCAAGCUGACGUCCCUGGACUUUAGUUUGUUCAAGUAAGUCCACACCAAUAUUUGUAA-UCCAUCUCUGCA ...................((((((((..((((((((.(((....))).))))))))....))))....)))).............-............ ( -17.40) >consensus CCAUCCGCUUGCUUUCCACUGUGUGCUGGCAAGCUGACGUCCCUGGACUUUAGUUUAUUCAAGUAAGUAGACA__AUU_UUU_UAA_UACAUCUCUGAA ......((((((((.(((........))).(((((((.(((....))).)))))))....))))))))............................... (-13.89 = -13.92 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:44 2006