| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,826,711 – 14,826,816 |
| Length | 105 |
| Max. P | 0.584857 |
| Location | 14,826,711 – 14,826,816 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.71 |
| Mean single sequence MFE | -30.84 |
| Consensus MFE | -21.05 |
| Energy contribution | -20.83 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14826711 105 + 23771897 UAUUU----UGUUGUUGU---UU---GGGGCCCAUUUACCUUGAGAGUUGGCCCC--GGUUUUAUCAUUAAUGUGUGUGCCCAGUUCCUUAAUUAGCGGCGGGCACCG-UCAAAAAAU-- ..(((----((.((....---((---((((((.((((.......)))).))))))--)).................((((((.((..((.....))..))))))))))-.)))))...-- ( -31.00) >DroYak_CAF1 65138 105 + 1 UUUUU----UGUUGCUGU---UU---GGGGCUCAUUUACCUGGAGAGUUGGCCCC--GGUUUUAUCAUUAAUGUGUGUGCCCAGUUCCUUAAUUAGUGGCGGGCACCG-UCAAAAAAU-- (((((----((..((...---((---((((((.((((.......)))).))))))--))...............(.((((((.((..((.....))..))))))))))-)))))))).-- ( -31.40) >DroAna_CAF1 58660 120 + 1 UUUUUGUUUGGUUGUUUUUUUUUGGCGGGAACCAUUUACCUUGAGAGUGAGUCUCUUCGCUUUAUCAUUAAUGUGUGUGCUCAGUUCCUUAAUUAGUGACGGGGACUGGCCAAAAAAUAC .................((((((((((((.((((((.......((((((((....))))))))......)))).))...)))(((((((...........))))))).)))))))))... ( -30.12) >consensus UUUUU____UGUUGUUGU___UU___GGGGCCCAUUUACCUUGAGAGUUGGCCCC__GGUUUUAUCAUUAAUGUGUGUGCCCAGUUCCUUAAUUAGUGGCGGGCACCG_UCAAAAAAU__ ..........................((((((.((((.......)))).)))))).....................((((((.((..((.....))..)))))))).............. (-21.05 = -20.83 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:43 2006