| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,824,111 – 14,824,231 |
| Length | 120 |
| Max. P | 0.550519 |
| Location | 14,824,111 – 14,824,231 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.19 |
| Mean single sequence MFE | -24.02 |
| Consensus MFE | -17.55 |
| Energy contribution | -18.67 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14824111 120 + 23771897 UAUUGUGCAUUUGCGCUUGAAGCGAAUUAUGUGUAUGAAAAAUGCAUAUAAAGUUUUUCCUCUUUAUCCAUAGCGAAAUGUGCAAACAAAAUAAACAAUCCGAAAAACAAACUUAUGCAC ..(((..(((((.((((.(((((...((((((((((.....)))))))))).)))))..............)))))))))..)))................................... ( -25.26) >DroYak_CAF1 62378 119 + 1 UAUUGUGCAUUUGCGCUUGAAGCGAAUUAUGUGUAUGAAAAAUGCAUAAAAAGUUUUUGCUCCUUAUCC-CAGCGAAAUGUGCAAACAAAAUAAACAAUCCGAAAAACAAACUUAUGCAC ..(((..(((((.((((.((((((((...(((((((.....))))))).......)))))).....)).-.)))))))))..)))................................... ( -23.20) >DroAna_CAF1 55992 111 + 1 UACUGUGCAUUUGCGCUUGAAGCGAAUUAUUUGUAUGAAAAAUGCAUAAAAAGUUGUUGCUUCUUUGCC-CAGCGAAAUGUGCAAAUAAAAUAAACAAUCCAAAAAGCAAAU-------- ...((..(((((.((((.(((((((....(((.((((.......)))).)))....)))))))......-.)))))))))..))............................-------- ( -23.60) >consensus UAUUGUGCAUUUGCGCUUGAAGCGAAUUAUGUGUAUGAAAAAUGCAUAAAAAGUUUUUGCUCCUUAUCC_CAGCGAAAUGUGCAAACAAAAUAAACAAUCCGAAAAACAAACUUAUGCAC ..(((..(((((.((((.(.((((((...(((((((.....))))))).......)))))).)........)))))))))..)))................................... (-17.55 = -18.67 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:42 2006