Locus 5403

Sequence ID 3L_DroMel_CAF1
Location 14,817,746 – 14,817,865
Length 119
Max. P 0.784953
window8546

overview

Window 6

Location 14,817,746 – 14,817,865
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.89
Mean single sequence MFE -29.36
Consensus MFE -26.26
Energy contribution -25.90
Covariance contribution -0.36
Combinations/Pair 1.06
Mean z-score -1.37
Structure conservation index 0.89
SVM decision value 0.57
SVM RNA-class probability 0.784953
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14817746 119 - 23771897
GACUCGUCGGACGAGCAAAGCCAAUAGCAUUUGGUUUUAACACGUUUUACUGUUUCUGUUUGCCAAAACAUUUCGUUGCUCGUCGAUUUUUAAUGAGAAAAGGGUUUUAU-CCGUUUCAC
.....((((.((((((((((((((......))))))))..................(((((....))))).......))))))))))......(((((...((((...))-)).))))). ( -29.30)
>DroSec_CAF1 52607 120 - 1
GACUCGUUGGACGAGCAAAGCCAAUAGCAUUUGGUUUUAACACGUUUUACUGUUUCUGUUUGCCAAAACAUUUCGUUGCUCGUCGAUUUUUAAUGAGAAAAGGGUUUUAUUCCGUUUCAC
..((((((((((((((((((((((......))))))))..................(((((....))))).......)))))))......)))))))....(((......)))....... ( -29.80)
>DroSim_CAF1 45747 120 - 1
GACUCGUUGGACGAGCAAAGCCAAUAGCAUUUGGUUUUAACACGUUUUACUGUUUCUGUUUGCCAAAACAUUUCGUUGCUCGUCGAUUUUUAAUGAGAAAAGGGUUUUAUUCCGUUUCAC
..((((((((((((((((((((((......))))))))..................(((((....))))).......)))))))......)))))))....(((......)))....... ( -29.80)
>DroEre_CAF1 53161 120 - 1
GACUCGUCGGACGAGCAAAGCCAAUAGCAUUUGGUUUUAACACGUUUUACUCUUCCUGUUUGCCAAAACAUUUCGUUGCUCGUCGAUUUUUAAUGAGAAAAGGGUUUUAUUCCGUUUCAC
.....((((.((((((((((((((......))))))))..................(((((....))))).......))))))))))......(((((...(((......))).))))). ( -29.80)
>DroYak_CAF1 55843 120 - 1
GACUCGUCGGACGAGCAAAGCCAAUAGCAUUUGGUUUUAACACGUUUUACUGUUCCUGUUUGCCAAAACAUUUCGUUGCUCGUCGAUUUUUAAUGAGAAAAGGGUUUUAGUCCGUUUCAC
.....((((.((((((((((((((......))))))))..................(((((....))))).......))))))))))......(((((...(((......))).))))). ( -29.10)
>DroAna_CAF1 50255 120 - 1
GACUCGUUGGACGGGCAAAGCCAUUGGCAUUUGGUUUUAACACGUUUUACUGUUUCUGUUUGCCAAAACAUUUCGUUGCUCGUCGAUUUUUAAUGAGAAAAGGGUUUAUUUUUGCUAUUU
..((((((((((((((((.....((((((..(((....((((........)))).)))..)))))).........)))))))))......))))))).....(((........))).... ( -28.34)
>consensus
GACUCGUCGGACGAGCAAAGCCAAUAGCAUUUGGUUUUAACACGUUUUACUGUUUCUGUUUGCCAAAACAUUUCGUUGCUCGUCGAUUUUUAAUGAGAAAAGGGUUUUAUUCCGUUUCAC
(((((....(((((((((.((.....)).((((((...((((.(..........).)))).))))))........)))))))))..(((((.....)))))))))).............. (-26.26 = -25.90 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:26 2006