| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,813,358 – 14,813,449 |
| Length | 91 |
| Max. P | 0.982554 |
| Location | 14,813,358 – 14,813,449 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 86.85 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -22.10 |
| Energy contribution | -23.10 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14813358 91 + 23771897 GGAAUGAUUGGUGUUACAUAUACAU--------ACAUAUGUACUUUGUUCAUAUGGCAUAUUAACGAUGUUGAUGUGCUGGAACACCAUUACGUUUUAU ((((((..(((((((.((.......--------.((((((.((...)).))))))((((((((((...)))))))))))).)))))))...)))))).. ( -27.60) >DroSec_CAF1 48415 87 + 1 GGAAUGAUUGGUGUUACUUAUA------------CAUAUGCAGUUUGUUCAUAUGGCAUAUUAACGAUGUUGAUGUGCUGGAUCCCCAUUACGUUUUAU ((((((..(((...........------------((((((.........))))))((((((((((...)))))))))).......)))...)))))).. ( -18.60) >DroSim_CAF1 41379 98 + 1 GGAAUGAUUGGUGUUACAUAUACAUACAUACAUACAUAUGUAGUUAGUUCAUAUGGCAUAUU-ACGAUGUUGAUGUGCUGGAACACCAUUACGUUUUAU ((((((..(((((((.(((((((..((.(((((....)))))))..))..)))))(((((((-(......))))))))...)))))))...)))))).. ( -25.20) >consensus GGAAUGAUUGGUGUUACAUAUACAU________ACAUAUGUAGUUUGUUCAUAUGGCAUAUUAACGAUGUUGAUGUGCUGGAACACCAUUACGUUUUAU ((((((..(((((((...................((((((.........))))))((((((((((...))))))))))...)))))))...)))))).. (-22.10 = -23.10 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:22 2006