Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,570,519 – 1,570,609 |
Length | 90 |
Max. P | 0.670885 |
Location | 1,570,519 – 1,570,609 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 92.97 |
Mean single sequence MFE | -15.80 |
Consensus MFE | -12.94 |
Energy contribution | -13.22 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.45 |
Structure conservation index | 0.82 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1570519 90 + 23771897 AAUC-GGAAUCCCAAGGC-CCGCAUAAAAACUUCCGUUUGUCACCUUAUAAGGUGGUCAUCAUAAAAAAGCGAUGAAAACCAAACCAAAACA ....-((((.......(.-...)........))))(((((((((((....))))))(((((..........)))))....)))))....... ( -15.56) >DroSec_CAF1 14970 90 + 1 AAUC-GGAAUCCCAAGGC-CCGCAUUAAAACUUCCGUUUGUCACCUUAUAAGGUGGUCAUCAUAAAAAAGCGAUGAAAACCAAACCAAAACA ....-((((.......(.-...)........))))(((((((((((....))))))(((((..........)))))....)))))....... ( -15.56) >DroSim_CAF1 15221 91 + 1 AAUAAGGAAUCCCAAGGC-CCGCAUUAAAACUUCCGUUUGUCACCUUAUAAGGUGGUCAUCAUAAAAAAGCGAUGAAAACCAAACCAAAACA .....((((.......(.-...)........))))(((((((((((....))))))(((((..........)))))....)))))....... ( -15.46) >DroEre_CAF1 21181 90 + 1 AAUC-GGAAUUCCAAGGCCCCGCAUAAAAACUUCCGUUUGUCACCUUAUAAGGUGGCCAUCAUAAA-AAGCGAUGAAAGCCAAACCAAAACA ....-((....))..(((..(((....((((....))))(((((((....))))))).........-..)))......)))........... ( -18.70) >DroYak_CAF1 15527 90 + 1 AAUC-CGAGUUCCAAGGCCCCGCAUAAAAACUUCCGUUUGUCGCCGUAUAAGGUGGUCGUCAUAAA-AAGCGAAGAAAACCAAACCAAAACA ....-.(((((.....((...)).....)))))..((((((((((......)))))((((......-..)))).......)))))....... ( -13.70) >consensus AAUC_GGAAUCCCAAGGC_CCGCAUAAAAACUUCCGUUUGUCACCUUAUAAGGUGGUCAUCAUAAAAAAGCGAUGAAAACCAAACCAAAACA .....((((.......((...))........))))((((((((((......)))))(((((..........)))))....)))))....... (-12.94 = -13.22 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:47 2006