| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 187,229 – 187,324 |
| Length | 95 |
| Max. P | 0.925192 |
| Location | 187,229 – 187,324 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 78.16 |
| Mean single sequence MFE | -29.62 |
| Consensus MFE | -15.35 |
| Energy contribution | -18.78 |
| Covariance contribution | 3.43 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 187229 95 + 23771897 CCUUGGUUGUGUGUGUACACACUU--GUUUGCCAUUCUCUGGGAAACGCCGUAAGCUAGGGGAAUGGUAAAGAGAGCAGCGCAGUAAACAACU-AGGU .(((((((((.(((((...(.(((--.(((((((((((((.(....)((.....))..)))))))))))))))).)..)))))....))))))-))). ( -34.30) >DroSec_CAF1 3216 94 + 1 CCUUGGUUGUGUGUGUACACACUU--GUUUGCCAUUCUCUGGGAAACGCCGUA-GCAAGGGGAAUGGUAAAGAGAGCAGGGUAGUAAACAACU-UAGU (((((.(((((((....))))).(--.(((((((((((((.(....)((....-))..))))))))))))).))).)))))............-.... ( -32.90) >DroSim_CAF1 3217 94 + 1 CCUUGGUUGUGUGUGUACACACUU--GUUUGCCAUUCUCUGGGAAACGCCGUA-GCCAGGGGAAUGGUAAAGAGAGCAGGGCAGUAAACAACU-AAGU .((((((((((((....))).(((--((((((((((((((.((..((...)).-.)).)))))))))).....))))))).......))))))-))). ( -34.60) >DroEre_CAF1 3223 92 + 1 CCUUGGUUGU----GUACACACUU--GUUUGCCAUUCUCUGGGAAAUGCCGUCAGCCAGGGGAAUGGUAAAGAGAGCAGGGCAGUAAACAACUUAAGU .(((((((((----.(((...(((--((((((((((((((.((...((....)).)).)))))))))).....)))))))...))).))))).)))). ( -31.70) >DroYak_CAF1 3222 91 + 1 CUUUGGUUGU----GUACACACUU--GUUUGCCAUUCACUGGGAAAUGCCUUCAGCCAGGGGAAUGGUAAAGAGAGCAGGGCAGUAAACAACA-AAGU (((((.((((----.(((...(((--(((((((((((.(((((((.....)))..))))..))))))).....)))))))...))).))))))-))). ( -30.10) >DroPer_CAF1 3223 76 + 1 UCA----UGGGUGUGUACACACUGACACUUGCCCCUUU--------AGCCAUU-ACCAAUGGAACGGAAA------CGCUGCAGUAAACAAC---AGU ...----.((((((((........))))..))))((.(--------((((((.-....))))..((....------))))).))........---... ( -14.10) >consensus CCUUGGUUGUGUGUGUACACACUU__GUUUGCCAUUCUCUGGGAAACGCCGUA_GCCAGGGGAAUGGUAAAGAGAGCAGGGCAGUAAACAACU_AAGU (((((.(((((((....))))).....(((((((((((((.((............)).)))))))))))))..)).)))))................. (-15.35 = -18.78 + 3.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:09 2006