| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,813,205 – 14,813,318 |
| Length | 113 |
| Max. P | 0.550938 |
| Location | 14,813,205 – 14,813,318 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.73 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -20.24 |
| Energy contribution | -20.52 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14813205 113 - 23771897 AAAGGCCA------CGAAAAUAAAGAAACUCC-CGCAUUUACUCCUGAUUAUAAUUGAAAAUUUAAUUAUUUUCAAUGGAAAGGAUAGCCCAGCAGGGCUUAUUUGUUCACUGUAUUUGU ........------..................-.(((..(((...(((..((((((((....))))))))..)))...(((..((((((((....)))).))))..)))...)))..))) ( -22.70) >DroSec_CAF1 48262 113 - 1 AAAGACCA------CGAAAAUAAAGAAACUCC-CGCAUUUACUCCUGAUUAUAAUUGAAAAUUUAAUUAUUUUCAAUGGAAAGGAAAGCCCAGCAGGGCUUAUUUGUUCACAGUAUUUGU ........------..................-.(((..(((((((..((...(((((((((......))))))))).)).))))((((((....))))))...........)))..))) ( -24.30) >DroSim_CAF1 41226 113 - 1 AAAGACCA------CGAAAAUAAAGAAACUCC-CGCAUUUACUCCUGAUUAUAAUUGAAAAUUUAAUUAUUUUCAAUGGAAAGGAAAGCCCAGCAGGGCUUAUUUGUUCACUGUAUUUGU ........------..................-.(((..(((((((..((...(((((((((......))))))))).)).))))((((((....))))))...........)))..))) ( -24.10) >DroEre_CAF1 47666 113 - 1 AAAGGCCA------CGAAAAUAAAGAAACUCCACGCAUUUACUCCUGAUUAUAAUUGAAAAUUUAAUUAUUUUCAAUGGAAG-GGAAGCCCAGCAGGGCUUAUUUGUUCACUGUAUUUGU ........------....................(((..(((((((.......(((((((((......)))))))))...))-))((((((....))))))...........)))..))) ( -22.70) >DroYak_CAF1 51270 113 - 1 AAAGGGCA------CGAAAAUAAAGAAACUCC-CGCAUUUACUCCUGAUUAUAAUUGAAAAUUUAAUUAUUUUCAAUGGAAAGGAAAGCCCAGCAGGGCUUAUUUGUUCACUUUAUUUGU ........------...((((((((.......-.........((((..((...(((((((((......))))))))).)).))))((((((....)))))).........)))))))).. ( -25.80) >DroAna_CAF1 46120 119 - 1 AAAAAAUAUGAGACCAAAAAUCAAGAAUUUCC-CACAUUUACUCCUGAUUAUAAUUGAAAAUUUAAUUAUUUUCAAUGGGAAGGAAAGCCCAGCAGGGCUUAUUUGUUCUCUGUUUGUAU ...(((((.((((.((((.........(((((-(.((........))......(((((((((......)))))))))))))))..((((((....)))))).)))).))))))))).... ( -30.90) >consensus AAAGACCA______CGAAAAUAAAGAAACUCC_CGCAUUUACUCCUGAUUAUAAUUGAAAAUUUAAUUAUUUUCAAUGGAAAGGAAAGCCCAGCAGGGCUUAUUUGUUCACUGUAUUUGU ..................................(((..(((((((..((...(((((((((......))))))))).)).))))((((((....))))))...........)))..))) (-20.24 = -20.52 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:21 2006