| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,811,926 – 14,812,035 |
| Length | 109 |
| Max. P | 0.999329 |
| Location | 14,811,926 – 14,812,035 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.13 |
| Mean single sequence MFE | -17.67 |
| Consensus MFE | -15.29 |
| Energy contribution | -15.49 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.87 |
| SVM decision value | 3.52 |
| SVM RNA-class probability | 0.999329 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14811926 109 + 23771897 UACCAAAACUACUUACAGCCAUUCUCAUACUUUCUGCCAUAACUUUUAGCCCGGCCCA----CAACACAGGGCAAAAA----A--AAAAGAA-AAAACUCAACUAGAUGAGAAUACAAAA ....................((((((((.((...........(((((......((((.----.......)))).....----.--)))))..-...........))))))))))...... ( -17.25) >DroSec_CAF1 47042 110 + 1 UACCAAAACUACUUACAGCCAUUCUCAUACUUUCUGCCAUAACUUUUAGCCCGGCCCA----CAACACAGGGCACAAA----A--AAAAGAAGAAAAUUCAACUAGAUGAGAAUACAAAA ....................((((((((..............(((((......((((.----.......)))).....----.--)))))..((....))......))))))))...... ( -17.60) >DroSim_CAF1 40072 112 + 1 UACCAAAACUACUUACAGCCAUUCUCAUACUUUCUGCCAUAACUUUUAGCCCGGCCCA----CAACACAGGGCACAAA----AAAAAAAGAAGAAAAUUCAACUAGAUGAGAAUACAAAA ....................((((((((.........................((((.----.......)))).....----.......(((.....)))......))))))))...... ( -16.90) >DroEre_CAF1 46453 116 + 1 UACCAAAACUACUUACAGCCAUUCUCAUACUUUCUGCCAUAACUUUUAGCCCGGCCCA----CAACACAGGGCCCACAUCACGAAAAAAGAAGAAAUUUCAACUAGAUGAGAAUACAAAA ....................((((((((........................(((((.----.......)))))........((((..........))))......))))))))...... ( -18.90) >DroYak_CAF1 50056 115 + 1 UACCAAAACUACUUACAGCCAUUCUCAUACUUUCUGCCAUAACUUUUAGCCCGGCCCACACACAACACAGGGCACGAA-----AAAAAAGAAGAAAAUUCAACUAGAUGAGAAUACAAAA ....................((((((((..............(((((....((((((............)))).))..-----..)))))..((....))......))))))))...... ( -17.70) >consensus UACCAAAACUACUUACAGCCAUUCUCAUACUUUCUGCCAUAACUUUUAGCCCGGCCCA____CAACACAGGGCACAAA____AAAAAAAGAAGAAAAUUCAACUAGAUGAGAAUACAAAA ....................((((((((....................((((.................))))................(((.....)))......))))))))...... (-15.29 = -15.49 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:18 2006