Locus 5395

Sequence ID 3L_DroMel_CAF1
Location 14,810,260 – 14,810,371
Length 111
Max. P 0.990410
window8536

overview

Window 6

Location 14,810,260 – 14,810,371
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.32
Mean single sequence MFE -18.75
Consensus MFE -16.95
Energy contribution -16.57
Covariance contribution -0.39
Combinations/Pair 1.08
Mean z-score -2.02
Structure conservation index 0.90
SVM decision value 2.21
SVM RNA-class probability 0.990410
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14810260 111 + 23771897
CGAUAAAUAUAAUUCAAUUAGGAAAUGUCUACAAUCUGUGCUAAAUCAAACUCUGA----CUGACAUAUCAAAAUGUAUU-----CAAUGACAAACUAAUUGAAUCUUUGUAUCCCAGAC
.((((...(..((((((((((((.((((((((.....))).....(((.....)))----..))))).))....(((...-----.....)))..))))))))))..)..))))...... ( -18.70)
>DroSec_CAF1 45483 111 + 1
CGAUAAAUAUAAUUCAAUUAGGAAAUGUCUACAAUCUGUGCUAAAUCAAACUCUGA----CUGACAUAUCAAAAUGUAUU-----CAAUGACAAACUAAUUGAAUCUUUGUAUCCCAGAC
.((((...(..((((((((((((.((((((((.....))).....(((.....)))----..))))).))....(((...-----.....)))..))))))))))..)..))))...... ( -18.70)
>DroSim_CAF1 38432 111 + 1
CGAUAAAUAUAAUUCAAUUAGGAAAUGUCUACAAUCUGUGCUAAAUCAAACUCUGA----CUGACAUAUCAAAAUGUAUU-----CAAUGACAAACUAAUUGAAUCUUUGUAUCCCAGAC
.((((...(..((((((((((((.((((((((.....))).....(((.....)))----..))))).))....(((...-----.....)))..))))))))))..)..))))...... ( -18.70)
>DroEre_CAF1 44883 111 + 1
CGAUAAAUAUAAUUCAAUUAGCAAAUGUCUACAAUCUGUGCUAAAUCAAACUCUGA----CUGACAUAUCAAAAUGUAUU-----CAAUGACAAACUAAUUGAAUCUUUGUGUCCCAGAC
.((((...(..((((((((((....(((((((.....))).............(((----...((((......))))..)-----))..))))..))))))))))..)..))))...... ( -17.50)
>DroYak_CAF1 48397 111 + 1
CGAUAAAUAUAAUUCAAUUAGUAAAUGUCUACAAUCUGUGCUAAAUCAAACUCUGA----CUGACAUAUCAAAAUGUAUU-----CAAUGACAAACUAAUUGAAUCUUUGUGUCCCAGAC
.((((...(..(((((((((((...(((((((.....))).............(((----...((((......))))..)-----))..)))).)))))))))))..)..))))...... ( -19.30)
>DroAna_CAF1 43460 120 + 1
CGAUAACUAUAAUUCAAUUAGCAAAUGUCCACAAUCUGUGCUAAAUCAAACACUGACUGACUGACAUAUCAAAAUGUAUUCAAUUCAAUGACAAACUAAUUGAAUCUUUGUGUCCCAGAC
.((((...(..((((((((((....(((((((.....))).............(((.(((...((((......))))..)))..)))..))))..))))))))))..)..))))...... ( -19.60)
>consensus
CGAUAAAUAUAAUUCAAUUAGGAAAUGUCUACAAUCUGUGCUAAAUCAAACUCUGA____CUGACAUAUCAAAAUGUAUU_____CAAUGACAAACUAAUUGAAUCUUUGUAUCCCAGAC
.((((...(..((((((((((....(((((((.....))).......................((((......))))............))))..))))))))))..)..))))...... (-16.95 = -16.57 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:15 2006