| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,809,866 – 14,809,986 |
| Length | 120 |
| Max. P | 0.721068 |
| Location | 14,809,866 – 14,809,986 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.05 |
| Mean single sequence MFE | -29.15 |
| Consensus MFE | -19.66 |
| Energy contribution | -20.55 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.721068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14809866 120 + 23771897 UGAAACAGCUGUUUCAUCUAUUUGUCGCGGUACGCUUGCGCACAAAAUAUGCAAAUUAAGUGAAAAAAAAACUGUGCGAAUCGCAGAAACUUGAACAAAAGAUAAACUGCAACAGCUGAC .....((((((((((.....((((((((((.....))))).)))))....(((.....(((.........))).)))))...((((...(((......))).....)))))))))))).. ( -28.40) >DroSec_CAF1 45158 119 + 1 UGAAACAGCUGUUUCAUCCAUUUGUCGCGCUACGCCUGCGCACAAAAUAUGCAAAUGAAGUGAAUA-AAAACUGUGCGAAUCGCAGAAACUUGAACAAAAGACAAACUGCAACAGCUGAC .....((((((((((.....(((((.((((.......)))))))))....(((.....(((.....-...))).)))))...((((...(((......))).....)))))))))))).. ( -31.80) >DroSim_CAF1 38058 119 + 1 UGAAACAGCUGUUUCAUCCAUUUGUCGCGCUACGCCUGCGCACAAAAUAUGCAAAUUAAGUGAAUA-AAGACUGUGCGAAUCGCAGAAAUUUGAACAAAAGACAAACUGCAACAGCUGAC .....((((((((.((....((((((((((.......))))..........((((((.(((.....-...))).((((...))))..)))))).......)))))).)).)))))))).. ( -31.60) >DroEre_CAF1 44535 117 + 1 UGAAACAGCUGUUUCAUCCAUUUAUCGCGGUACGCCUGCGCACAAAAUAUGCAAAUUGAGUGAAUG-AAAAC--UGCGAAUUGCAGAAACUUGAACAAAAGACAAGCUGCAACAGCUGAC .....((((((((((((.((((((..((((.....))))(((.......)))....)))))).)))-)))..--......((((((...(((......))).....)))))))))))).. ( -32.50) >DroYak_CAF1 48023 119 + 1 UGAAACAGCUGUUUCAUCCAUUUGUCGCGGUACGCCUGCGCACAGAAUAUGCAAAUUGAGUGAAUA-AGAAGUGUGCGAAUUGCAGAAACUUGAACAAAAGACAAACUGCAACAGCUGAC .....((((((((((.....((((((((((.....))))).)))))....(((.(((.........-...))).)))))).(((((...(((......))).....)))))))))))).. ( -30.10) >DroAna_CAF1 43176 102 + 1 UAAAACAGCUGUUCCAUAACAUUGACGCGGGACGCCUGCGCACUGGAGAUGCAAAU-AAGUGGGAA-A----------------AAAAACAAGAAUAAAACGCAAUCUAUUAGAGCUGAC .....(((((.((((..........((((((...))))))((((............-.))))))))-.----------------.......(((...........))).....))))).. ( -20.52) >consensus UGAAACAGCUGUUUCAUCCAUUUGUCGCGGUACGCCUGCGCACAAAAUAUGCAAAUUAAGUGAAUA_AAAACUGUGCGAAUCGCAGAAACUUGAACAAAAGACAAACUGCAACAGCUGAC .....((((((((((((.........((((.....))))(((.......))).......)))))..................((((...(((......))).....)))).))))))).. (-19.66 = -20.55 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:14 2006