Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,806,745 – 14,806,859 |
Length | 114 |
Max. P | 0.847286 |
Location | 14,806,745 – 14,806,859 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 90.41 |
Mean single sequence MFE | -38.42 |
Consensus MFE | -30.66 |
Energy contribution | -31.72 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.00 |
Structure conservation index | 0.80 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.847286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14806745 114 + 23771897 CACGACUUUGAACUACAUUUGUGGGGGUUUGGCCUGCAAUGCCACCAAAUCCCCGCGGACUGGCUAAGUUUGUUGUUGGGGGUAGAAUGGUAGGUAUGGUGGGUACGGUGUUAU ((((((((....((((....)))))))))..(((..(.(((((((((.(((((((((((((.....)))))))....))))))....)))).))))).)..)))...))).... ( -38.70) >DroSec_CAF1 42035 105 + 1 CACGACUUUGAACUACAUUUGUGGGGGUUUGGCCUGCAAUGCCACCAAAUCCCCGCGGACUGCCUAAGUUUGUUGUUGGGGGUAGAAUG---------GUGGGUACGGUGGUAU .((.(((.....((((.(((((((((((((((...((...))..)))))))))))))))((((((..(........)..))))))....---------))))....))).)).. ( -38.10) >DroSim_CAF1 34919 105 + 1 CACGACUUUGAACUACAUUUGUGGGGGUUUGGCCUGCAAUGCCACCAAAUCCCCGCGGACUGCCUAAGUUUGUUGUUGGGGGUAGAAUG---------GUGGGUACGGUGGUAU .((.(((.....((((.(((((((((((((((...((...))..)))))))))))))))((((((..(........)..))))))....---------))))....))).)).. ( -38.10) >DroYak_CAF1 44875 100 + 1 CACGACUUUGAACUACAUUUGUGGGGGUUUGCCCUGCAAUGCCAUCAAAUCCCCGCGGACUGCUUAAGUUUGUUGUUGGGGGUA---UG---------GUGG--AUGGUGGGAU ............((((..(((..(((.....)))..)))..((((((.(((((((((((((.....)))))))....)))))).---))---------))))--...))))... ( -38.80) >consensus CACGACUUUGAACUACAUUUGUGGGGGUUUGGCCUGCAAUGCCACCAAAUCCCCGCGGACUGCCUAAGUUUGUUGUUGGGGGUAGAAUG_________GUGGGUACGGUGGUAU .((.(((.....((((.(((((((((((((((...((...))..)))))))))))))))((((((..(........)..)))))).............))))....))).)).. (-30.66 = -31.72 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:13 2006