Locus 5392

Sequence ID 3L_DroMel_CAF1
Location 14,806,587 – 14,806,705
Length 118
Max. P 0.993113
window8533

overview

Window 3

Location 14,806,587 – 14,806,705
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.78
Mean single sequence MFE -26.63
Consensus MFE -21.90
Energy contribution -22.06
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -2.47
Structure conservation index 0.82
SVM decision value 2.37
SVM RNA-class probability 0.993113
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14806587 118 + 23771897
AUAAAUUUUCACAUUCGCGGUAUGCCCGCGUAAUCUACUAGAAUCGGGUAUUAUAAA-C-CCCCCAUCCAAAACCUUUUUGCCACCCAACCAACCGGCAAAAGAGAUACAAAUUGCAGUA
................((((.....))))(((.(((.........((((.......)-)-)).............((((((((............))))))))))))))........... ( -21.60)
>DroSec_CAF1 41875 120 + 1
AUAAAUUUUUGCAUUCGCGGUAUGCCCGCGUAAUCUACCAGUAUCGGGUAUUAUAAAUCCCCCCCAUUCGAAACCUUUUUGCCACCCAACCAACCGGCAAAAGAGAUACAAAUUGCAGUA
........(((((..(((((.....)))))..........((((((((..............)))..........((((((((............)))))))).)))))....))))).. ( -28.04)
>DroSim_CAF1 34760 119 + 1
AUACAUUUUUGCAUUCGCGGUAUGCCCGCGUAAUCUACUAGUAUCAGGUAUUAUAAA-CCCCCCCAUCCGAAACCUUUUUGCCACCCAACCAACCGGCAAAAGAGAUACAAAUUGCAGUA
........(((((..(((((.....)))))..........(((((.(((.......)-))...............((((((((............)))))))).)))))....))))).. ( -26.40)
>DroEre_CAF1 41238 112 + 1
CAACAAUUUCACAUUCGCGGUAUGCCCGCGUAAUCUUCUAGUAUCGGGUAUUAUAAA-ACGCCCCGUACAAAACCUUUUUGCCACC-------CCGGCAAAAGAGAUACAAAUUGCAGUA
...((((((.......((((.....))))(((.((((...((((.(((..((....)-)..))).)))).......(((((((...-------..))))))))))))))))))))..... ( -29.80)
>DroYak_CAF1 44716 119 + 1
AAACAAUUUCACAUUCGCGGUAUGCCCGCGUAAUCUACUAGUAUCGGGUAUUAUAAG-CGCCCCCAUUCAAAACCUUUUUGCCACCCACCCAACCGGCAAAAGAGAUACAAAUUGCAGUA
...((((((......(((((.....)))))..........(((((((((........-.))))............((((((((............)))))))).)))))))))))..... ( -27.30)
>consensus
AUACAUUUUCACAUUCGCGGUAUGCCCGCGUAAUCUACUAGUAUCGGGUAUUAUAAA_CCCCCCCAUCCAAAACCUUUUUGCCACCCAACCAACCGGCAAAAGAGAUACAAAUUGCAGUA
..........((...(((((.....)))))..........((((((((..............)))..........((((((((............)))))))).)))))........)). (-21.90 = -22.06 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:12 2006