| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,805,910 – 14,806,014 |
| Length | 104 |
| Max. P | 0.893857 |
| Location | 14,805,910 – 14,806,014 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.57 |
| Mean single sequence MFE | -24.52 |
| Consensus MFE | -21.81 |
| Energy contribution | -21.73 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.893857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14805910 104 + 23771897 GCAUAUAUUAAAUAAAAAAUGCAAAAUCGUUAGGGCCGUCUAAGGGUGAUGAGGGUGACUCUCUCGGCCGAAGCGUGUGCAGCUGAAAUAAUCAAAA---------------AAACUCG- ...................((((....((((..(((((....(((((.((....)).)))))..)))))..))))..))))................---------------.......- ( -23.80) >DroSec_CAF1 41214 111 + 1 GCAUAUAUUAAAUAAAAAAAGCAAAAUCGUUAGGGCCGUCUAAGGGUGAUGAGGGUGACUCUCUCGGCCGAAACGUGUGCAACUGAAAUAAUCAAAAAAA---AAAA-----AAACUGG- ....................(((....((((..(((((....(((((.((....)).)))))..)))))..))))..)))....................---....-----.......- ( -23.00) >DroSim_CAF1 34087 114 + 1 GCAUAUAUUAAAUAAAAAAUGCAAAAUCGUUAGGGCCGUCUAAGGGUGAUGAGGGUGACUCUUUCGGCCGAAACGUGUGCAGUUGAAAUAAUCAAAAAAAAAAAAAA-----AAACUGG- ...................((((....((((..(((((...((((((.((....)).)))))).)))))..))))..)))).((((.....))))............-----.......- ( -26.30) >DroEre_CAF1 40567 113 + 1 GCAUAUAUUAAAUAAAAAAUGCAAAAUCGUUUGGGCCGUCUAAGGGUGAUGAGGGUGACUCUCUCGGCCGAAGCGUGUGCAGUUGAAAUAAUCAAAAAAACA-AAAA-----A-CCUGGG ...................((((....(((((.(((((....(((((.((....)).)))))..))))).)))))..)))).((((.....)))).......-....-----.-...... ( -28.10) >DroYak_CAF1 44018 113 + 1 GCAUAUAUUAAAUAAAAAAUGCAAAAUCGUUUGGGCCUUCUAAGGGUGAUGAGGGUGACUCUCUUGGCCGAAGCGUGUGCAGCUGAAAUAAUCAAAAAAAAA-AAAA-----AAACUGG- ...................((((....(((((.((((.....(((((.((....)).)))))...)))).)))))..)))).....................-....-----.......- ( -24.80) >DroAna_CAF1 39980 114 + 1 GCAUAUAUUAAAUAAAAAAUGCAAAAUCGUUAGGGCCGGCUAAGGGUGACGAGGGUGACU----UGGUCAGGGCGUUUGCAACUAAAAUAAUCAAAAAAAAA-AAAACUAAGAGAAAGG- ...................((((((..((((..((((.......(....).(((....))----)))))..)))))))))).....................-................- ( -21.10) >consensus GCAUAUAUUAAAUAAAAAAUGCAAAAUCGUUAGGGCCGUCUAAGGGUGAUGAGGGUGACUCUCUCGGCCGAAGCGUGUGCAGCUGAAAUAAUCAAAAAAAAA_AAAA_____AAACUGG_ ...................((((....((((..(((((....(((((.((....)).)))))..)))))..))))..))))....................................... (-21.81 = -21.73 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:09 2006