Locus 5387

Sequence ID 3L_DroMel_CAF1
Location 14,802,285 – 14,802,377
Length 92
Max. P 0.539623
window8526

overview

Window 6

Location 14,802,285 – 14,802,377
Length 92
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 94.30
Mean single sequence MFE -31.26
Consensus MFE -24.36
Energy contribution -24.44
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -1.61
Structure conservation index 0.78
SVM decision value 0.01
SVM RNA-class probability 0.539623
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14802285 92 + 23771897
AGGC-------AGCUUCGGGUGGCUUUGCCGCCUGCCGUUGGGCAACAUUUUAGUGCUGGCUUUAUUUACCUGCAGCCAGAGUAAUGGGUUAAAUAAAA
.(.(-------(((...(((((((...)))))))(((....)))...........)))).)((((((((((((..((....))..)))).)))))))). ( -29.50)
>DroSec_CAF1 37709 95 + 1
AGGCA----GCAGCUUCGGGUGGCUUUGCCGCCUGCCGUUGGGCAACAUUUUAGUGCUGGCUUUAUUUACCUGCAGCUAGAGUAAUGGGUUAAAUAAAA
.(.((----(((.....(((((((...)))))))(((....)))..........))))).)((((((((((((..((....))..)))).)))))))). ( -31.60)
>DroSim_CAF1 30491 95 + 1
AGGCA----GCAGCUUCGGGUGGCUUUGCCGCCUGCCGUUGGGCAACAUUUUAGUGCUGGCUUUAUUUACCUGCAGCCAGAGUAAUGGGUUAAAUAAAA
..((.----.((((..((((((((...))))))))..)))).))(((...(((.(.((((((.((......)).))))))).)))...)))........ ( -31.10)
>DroEre_CAF1 37335 92 + 1
AG-------GCAGCUUCGGGUGGCUUUGCCGGCUGCCGUUGGGCAACAUUUUAGUGCUGGCUUUAUUUACCUGCAGCCAGAGUAAUGGGUUAAAUAAAA
((-------.((.(....).)).))..((((((((((....))))((......))))))))((((((((((((..((....))..)))).)))))))). ( -28.10)
>DroYak_CAF1 39715 99 + 1
AGCCAGGAGGCGGCUUCGGGUGGCUUUGCCGGCUGCCGUUGGGCAACAUUUUAGUGCUGGCUUUAUUUACCUGCAGCCAGAGUAAUGGGUUAAAUAAAA
.(((....)))((((.(((((((....((((((((((....))))((......)))))))).....))))))).))))..................... ( -36.00)
>consensus
AGGCA____GCAGCUUCGGGUGGCUUUGCCGCCUGCCGUUGGGCAACAUUUUAGUGCUGGCUUUAUUUACCUGCAGCCAGAGUAAUGGGUUAAAUAAAA
...........(((..((((((((...))))))))(((((((....).........((((((.((......)).))))))..)))))))))........ (-24.36 = -24.44 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:05 2006