Locus 5386

Sequence ID 3L_DroMel_CAF1
Location 14,800,225 – 14,800,334
Length 109
Max. P 0.708384
window8525

overview

Window 5

Location 14,800,225 – 14,800,334
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.73
Mean single sequence MFE -32.38
Consensus MFE -21.68
Energy contribution -21.05
Covariance contribution -0.64
Combinations/Pair 1.21
Mean z-score -2.22
Structure conservation index 0.67
SVM decision value 0.37
SVM RNA-class probability 0.708384
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14800225 109 + 23771897
UCAUUGGGUUCCUUUGAGCCAGCUAAACAAUGUUCCCUGUCAGCAGAAC---UCGUACUACCAUAUA--------CUAGUCCCAACGACAGGCAGCACUUUUUGUUGGCCACCGCUCGAA
...((((((.....((.((((((.(((...((((.((((((....(.((---(.(((........))--------).))).)....)))))).))))..))).))))))))..)))))). ( -28.80)
>DroSec_CAF1 35672 109 + 1
UCAUUGGGCUCCUUUGAGCCAGCUAAACAAUGUUCCCUGUCAGCAGAAC---UCGUACUACCAUAUA--------CUAGUCCCAACGACAGGCGGCACUUUUUGUUGGCCACCGCUCGAA
...((((((.....((.((((((.(((...(((..((((((....(.((---(.(((........))--------).))).)....))))))..)))..))).))))))))..)))))). ( -30.80)
>DroSim_CAF1 28633 105 + 1
UCAUUGGGCUCCUUUGAGCCAGCUAAACAAUGUUCCCUGUCAGCAGAAC---UAGU----CAGCAUA--------CUAGUCCCAACGACAGGCAGCACUUUUUGUUGGCCACCGCUCGAA
...((((((.....((.((((((.(((...((((.((((((....(.((---((((----......)--------))))).)....)))))).))))..))).))))))))..)))))). ( -33.70)
>DroEre_CAF1 35286 115 + 1
CCAUUG-GUUCCUUUGAGCCAGCUAAACAAUGUUCCCUGUCAGCAGAAC---CCGCACUACCAUAUACCA-UAUAGUAGUCCCAACGACAGGCAGCACUUUUUGUUAGCCGCCGCUCGAA
......-......((((((..(((((.(((((((.((((((.((.....---..))(((((.((((...)-))).)))))......)))))).))))....))))))))....)))))). ( -31.00)
>DroYak_CAF1 37567 117 + 1
UCAUUGGGCUCCUUUGAGCCAGCUAAACAAUGUUCCCUGUCAGCAGAAC---UCGUACUACCAUAUAGUAGUAUAGUGGUUCCACCGACAGGCAGCACUUUUUGUUAGCCGCCGCUCGAA
...((((((((....))))).(((((.(((((((.((((((.(..((((---(.(((((((......)))))))...)))))..).)))))).))))....)))))))).......))). ( -38.10)
>DroAna_CAF1 34039 120 + 1
UCAUUUGGUGCCUUUGAGCCAGCUAAACAAUGUUCCUUGUCAGCAGGACUACUCGUUCUAGUAGUUGUUCUUGCACUCCCUCCAAUGGCAGGCAGCAGUUUUUGCUAGCCACCGCUCAAA
.............((((((..((((.((((......))))..(((((((((((......)))))....))))))...........)))).((((((((...))))).)))...)))))). ( -31.90)
>consensus
UCAUUGGGCUCCUUUGAGCCAGCUAAACAAUGUUCCCUGUCAGCAGAAC___UCGUACUACCAUAUA________CUAGUCCCAACGACAGGCAGCACUUUUUGUUAGCCACCGCUCGAA
.............((((((..(((((.(((((((.((((((.............................................)))))).))))....))))))))....)))))). (-21.68 = -21.05 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:04 2006