Locus 5383

Sequence ID 3L_DroMel_CAF1
Location 14,798,279 – 14,798,376
Length 97
Max. P 0.949686
window8516

overview

Window 6

Location 14,798,279 – 14,798,376
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -26.66
Consensus MFE -22.78
Energy contribution -23.50
Covariance contribution 0.72
Combinations/Pair 1.07
Mean z-score -1.80
Structure conservation index 0.85
SVM decision value 1.39
SVM RNA-class probability 0.949686
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14798279 97 + 23771897
GCUGGGCAUACCCUUUCGUAUAGCCUCUUGGUUAUUGGGUAUUAAAAAUGUAGAGUCUCUAAGCGGAUUUCAACAUGCUUUAUCCGCCCACGCCCAU
(((((((((((((......((((((....)))))).))))))((((.((((.((((((......))))))..))))..))))...))))).)).... ( -29.90)
>DroSec_CAF1 33746 97 + 1
GCUGGGCAUACCCCUUCGUAUAGUCACUUGGUUAUUGGGUAUUAAAAAUGUAGAGUCUCUAAGCGGAUUUCAACAUGCUUCAUCCGCCCACGCCCAU
(((((((((((((......(((..(....)..))).)))))).....((((.((((((......))))))..)))).........))))).)).... ( -23.90)
>DroEre_CAF1 33229 97 + 1
GCUGGGCAUACCCCUACUUAUAGCCGCUUGGUUAUUGGGUAUUAAAAAUGUAGAGUCUCUAAGCGGAUUUCAACAUGCUUCAGCCGCCCACGCCCAU
(((((((((((((......((((((....)))))).)))))).....((((.((((((......))))))..)))).........))))).)).... ( -27.50)
>DroYak_CAF1 35536 97 + 1
CCUGGGCAUACCCCAUCGUAUAGCCUCUUGGUUAUUGGGUAUUAAAAAUGUAGAGUCUCUAAGCGGAUUUCAACAUGCUUCAUCCGCCCACGCCCAU
..(((((((((((......((((((....)))))).))))))....................((((((.............))))))....))))). ( -28.22)
>DroAna_CAF1 32095 97 + 1
UCUGGGCAUACCCUUGCGGAUAAACUCUCGGUUAUUGGGUAUUAAAAUUGUAGACUCUGUAAGCGGAUUUCAACAUACUUCAAGCGCCCACGCCAGC
..(((((((((((..((.((.......)).))....))))))......(((.((.((((....))))..)).)))..........)))))....... ( -23.80)
>consensus
GCUGGGCAUACCCCUUCGUAUAGCCUCUUGGUUAUUGGGUAUUAAAAAUGUAGAGUCUCUAAGCGGAUUUCAACAUGCUUCAUCCGCCCACGCCCAU
(((((((((((((......((((((....)))))).)))))).....((((.((((((......))))))..)))).........))))).)).... (-22.78 = -23.50 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:56 2006